miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 222544 0.96 0.03868
Target:  5'- aGGUAGUagCCAUCAUGCCCACCACGUACc -3'
miRNA:   3'- -UCAUCG--GGUAGUACGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 88597 0.77 0.489611
Target:  5'- --gAGCCCAU--UGCCCacaGCCACGUGCg -3'
miRNA:   3'- ucaUCGGGUAguACGGG---UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 127853 0.77 0.50772
Target:  5'- --cAGCCCGUCGggcagguUGCCCACCaggaugcgcgGCGUGCa -3'
miRNA:   3'- ucaUCGGGUAGU-------ACGGGUGG----------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 35452 0.75 0.57757
Target:  5'- -aUAGUCCAUCAUGCCgCGCagguCGUGCa -3'
miRNA:   3'- ucAUCGGGUAGUACGG-GUGgu--GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 109763 0.74 0.648279
Target:  5'- -cUGGCCCAgcugcugCAUGCCCACUugGggaugGCu -3'
miRNA:   3'- ucAUCGGGUa------GUACGGGUGGugCa----UG- -5'
14615 5' -54.7 NC_003521.1 + 166271 0.74 0.658391
Target:  5'- ---cGCCC-UCAgacauacuUGUCCACCACGUACg -3'
miRNA:   3'- ucauCGGGuAGU--------ACGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 226091 0.72 0.737834
Target:  5'- --cGGCCCGUCAcGCCCaacagauaccACgGCGUGCa -3'
miRNA:   3'- ucaUCGGGUAGUaCGGG----------UGgUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 46584 0.72 0.756971
Target:  5'- cGGUAGCCCuUCuUGCCCAUgACGc-- -3'
miRNA:   3'- -UCAUCGGGuAGuACGGGUGgUGCaug -5'
14615 5' -54.7 NC_003521.1 + 43341 0.71 0.802767
Target:  5'- ---cGCgCCGUCcgGCCCGCCGCGc-- -3'
miRNA:   3'- ucauCG-GGUAGuaCGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 217503 0.71 0.810639
Target:  5'- aGGUGGCCUG-CAUGgCCAcggugcuguagacCCGCGUGCa -3'
miRNA:   3'- -UCAUCGGGUaGUACgGGU-------------GGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 148296 0.71 0.810639
Target:  5'- gGGUAGCCCAggUCGggaaaguUGCUcagCACCAgGUGCa -3'
miRNA:   3'- -UCAUCGGGU--AGU-------ACGG---GUGGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 134371 0.71 0.811507
Target:  5'- aAGUcGCUCAaCAUGCgCUACUGCGUGCg -3'
miRNA:   3'- -UCAuCGGGUaGUACG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 120080 0.71 0.820086
Target:  5'- --aGGUCCGUCAgGUCCACCGuguCGUGCu -3'
miRNA:   3'- ucaUCGGGUAGUaCGGGUGGU---GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 31221 0.71 0.820086
Target:  5'- cAGuUAGCCUGUUGUGUuuaccuCCGCUACGUGCg -3'
miRNA:   3'- -UC-AUCGGGUAGUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 198098 0.71 0.823472
Target:  5'- cGGU-GCCCuuguacgcuuuggaaAUCGUGCCgGCCACGUugucGCg -3'
miRNA:   3'- -UCAuCGGG---------------UAGUACGGgUGGUGCA----UG- -5'
14615 5' -54.7 NC_003521.1 + 169141 0.71 0.828499
Target:  5'- --cGGCCUAcggCGUGCUCACCAaGUGCg -3'
miRNA:   3'- ucaUCGGGUa--GUACGGGUGGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 17028 0.71 0.828499
Target:  5'- --aGGCCCGUCGUcuggcgGCCCACgGCGguaacgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA------CGGGUGgUGCa-----UG- -5'
14615 5' -54.7 NC_003521.1 + 153738 0.71 0.828499
Target:  5'- ---uGCCCAcCGUgGCCCACCaauccACGUACa -3'
miRNA:   3'- ucauCGGGUaGUA-CGGGUGG-----UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 114511 0.71 0.828499
Target:  5'- cGUGGCCgc-CGUGCCCACCGCc--- -3'
miRNA:   3'- uCAUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 34193 0.7 0.836736
Target:  5'- --cAGCUUAUCGUgGCCCACCAgGgcgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA-CGGGUGGUgCa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.