miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 109234 0.66 0.976467
Target:  5'- cGUGGCUCucggugcgcgugaugAUCAggcucugGCCCACCAcCGUGg -3'
miRNA:   3'- uCAUCGGG---------------UAGUa------CGGGUGGU-GCAUg -5'
14615 5' -54.7 NC_003521.1 + 75116 0.66 0.976467
Target:  5'- aGGUGGCCCGcacgguggacggcuuUCGgcgGCCgACCugGg-- -3'
miRNA:   3'- -UCAUCGGGU---------------AGUa--CGGgUGGugCaug -5'
14615 5' -54.7 NC_003521.1 + 111276 0.66 0.97548
Target:  5'- --gGGCCCGcCGUGCcagcgCCGCCGCGa-- -3'
miRNA:   3'- ucaUCGGGUaGUACG-----GGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 110786 0.66 0.97548
Target:  5'- cGUGGCCa--CGUGCCCcuCCAUG-ACg -3'
miRNA:   3'- uCAUCGGguaGUACGGGu-GGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 47515 0.66 0.97548
Target:  5'- ----cCCCAcCGUGCCCACCACc--- -3'
miRNA:   3'- ucaucGGGUaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 76145 0.66 0.97548
Target:  5'- --cGGCCuCGUCGUcacgggGUUCACCACGUAg -3'
miRNA:   3'- ucaUCGG-GUAGUA------CGGGUGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 149569 0.66 0.97548
Target:  5'- cGGUuuCCCGccCGUGCCCAuCUACGUGg -3'
miRNA:   3'- -UCAucGGGUa-GUACGGGU-GGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 112011 0.66 0.97548
Target:  5'- --gAGCCCcaccgggaaaacGUUcugcgGUGCCCcgACCGCGUACu -3'
miRNA:   3'- ucaUCGGG------------UAG-----UACGGG--UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 28310 0.66 0.974721
Target:  5'- --gAGCCuCAUCAUccagGCCUacguggucucgucgGCCAUGUGCg -3'
miRNA:   3'- ucaUCGG-GUAGUA----CGGG--------------UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 212334 0.66 0.972882
Target:  5'- --gAGCCCgacgGUCAcGCCCAUCACcacccgcugGUGCa -3'
miRNA:   3'- ucaUCGGG----UAGUaCGGGUGGUG---------CAUG- -5'
14615 5' -54.7 NC_003521.1 + 102001 0.66 0.972882
Target:  5'- cGUAGCcgccgCCAUCAgGCgCGCCAUGgaggGCa -3'
miRNA:   3'- uCAUCG-----GGUAGUaCGgGUGGUGCa---UG- -5'
14615 5' -54.7 NC_003521.1 + 15817 0.66 0.972882
Target:  5'- gAGcGGCUCAUCGUGCUgGgCAaGUGCg -3'
miRNA:   3'- -UCaUCGGGUAGUACGGgUgGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 142571 0.66 0.972882
Target:  5'- --aGGCUCGcCGUGCCCGCCGUGgcCg -3'
miRNA:   3'- ucaUCGGGUaGUACGGGUGGUGCauG- -5'
14615 5' -54.7 NC_003521.1 + 127957 0.66 0.972882
Target:  5'- uGUAGagCGUCAgauUGCCCACCuuGUAg -3'
miRNA:   3'- uCAUCggGUAGU---ACGGGUGGugCAUg -5'
14615 5' -54.7 NC_003521.1 + 33160 0.66 0.972882
Target:  5'- -uUGGCCuCGUCG-GCCUcgGCCACGUuccACg -3'
miRNA:   3'- ucAUCGG-GUAGUaCGGG--UGGUGCA---UG- -5'
14615 5' -54.7 NC_003521.1 + 126080 0.66 0.972882
Target:  5'- uGUGGCCgCGcCAccCCCACgGCGUGCc -3'
miRNA:   3'- uCAUCGG-GUaGUacGGGUGgUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 45417 0.66 0.970091
Target:  5'- aGGUAGCCg---GUGCCCGCCGuCG-GCg -3'
miRNA:   3'- -UCAUCGGguagUACGGGUGGU-GCaUG- -5'
14615 5' -54.7 NC_003521.1 + 142339 0.66 0.970091
Target:  5'- --cAGCCC-UCGuUGCCCACgACG-ACc -3'
miRNA:   3'- ucaUCGGGuAGU-ACGGGUGgUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 84900 0.66 0.96832
Target:  5'- gAGUAGgCCGUCAgcGCCCGguCCAgcagggccguauccuCGUGCa -3'
miRNA:   3'- -UCAUCgGGUAGUa-CGGGU--GGU---------------GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 153454 0.66 0.967099
Target:  5'- cGUAGgCCAgcg-GCUCgcagGCCACGUACa -3'
miRNA:   3'- uCAUCgGGUaguaCGGG----UGGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.