miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 238042 0.68 0.930389
Target:  5'- --gGGCCCGUCcuAUGCUgGCUugGUGa -3'
miRNA:   3'- ucaUCGGGUAG--UACGGgUGGugCAUg -5'
14615 5' -54.7 NC_003521.1 + 226604 0.7 0.852658
Target:  5'- cGUAGCCCAgcggcgUCAgggGCUCGCCGCa--- -3'
miRNA:   3'- uCAUCGGGU------AGUa--CGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 226552 0.67 0.956871
Target:  5'- -cUGGUCaCAguucCGUGUCUACCACGUAUa -3'
miRNA:   3'- ucAUCGG-GUa---GUACGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 226242 0.67 0.956871
Target:  5'- cGUAGCCCggCGUGUgCAgcuUCACGUcGCa -3'
miRNA:   3'- uCAUCGGGuaGUACGgGU---GGUGCA-UG- -5'
14615 5' -54.7 NC_003521.1 + 226091 0.72 0.737834
Target:  5'- --cGGCCCGUCAcGCCCaacagauaccACgGCGUGCa -3'
miRNA:   3'- ucaUCGGGUAGUaCGGG----------UGgUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 224724 0.68 0.919705
Target:  5'- ---cGCCCGUgGUGCUCGCCgACGcagGCg -3'
miRNA:   3'- ucauCGGGUAgUACGGGUGG-UGCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 222544 0.96 0.03868
Target:  5'- aGGUAGUagCCAUCAUGCCCACCACGUACc -3'
miRNA:   3'- -UCAUCG--GGUAGUACGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 217503 0.71 0.810639
Target:  5'- aGGUGGCCUG-CAUGgCCAcggugcuguagacCCGCGUGCa -3'
miRNA:   3'- -UCAUCGGGUaGUACgGGU-------------GGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 214618 0.67 0.948959
Target:  5'- gGGUAGCCCA----GCCagACCAgCGUGCu -3'
miRNA:   3'- -UCAUCGGGUaguaCGGg-UGGU-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 213569 0.66 0.967099
Target:  5'- cGUGGCCgCAUCAUcgGCgaGCC-CGUGCu -3'
miRNA:   3'- uCAUCGG-GUAGUA--CGggUGGuGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 212484 0.67 0.944663
Target:  5'- cGUGGCCCAcacgcaCAUGgCCgacgagACCACGUAg -3'
miRNA:   3'- uCAUCGGGUa-----GUACgGG------UGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 212334 0.66 0.972882
Target:  5'- --gAGCCCgacgGUCAcGCCCAUCACcacccgcugGUGCa -3'
miRNA:   3'- ucaUCGGG----UAGUaCGGGUGGUG---------CAUG- -5'
14615 5' -54.7 NC_003521.1 + 211761 0.67 0.948959
Target:  5'- cGUAGCCCGagAUGUCCgGCCAgGg-- -3'
miRNA:   3'- uCAUCGGGUagUACGGG-UGGUgCaug -5'
14615 5' -54.7 NC_003521.1 + 211383 0.69 0.901931
Target:  5'- uAGUAGgCCGUCAggcGCCgGCUcuCGUGCa -3'
miRNA:   3'- -UCAUCgGGUAGUa--CGGgUGGu-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 205778 0.68 0.914012
Target:  5'- uGGUGGCgCCGcacggcaugagCGUGCCCaACCGCGUcCg -3'
miRNA:   3'- -UCAUCG-GGUa----------GUACGGG-UGGUGCAuG- -5'
14615 5' -54.7 NC_003521.1 + 203366 0.69 0.901931
Target:  5'- cGGUGGCCCGcgcgCGaGCCCACaGCGUcACc -3'
miRNA:   3'- -UCAUCGGGUa---GUaCGGGUGgUGCA-UG- -5'
14615 5' -54.7 NC_003521.1 + 200949 0.69 0.888938
Target:  5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3'
miRNA:   3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 198098 0.71 0.823472
Target:  5'- cGGU-GCCCuuguacgcuuuggaaAUCGUGCCgGCCACGUugucGCg -3'
miRNA:   3'- -UCAuCGGG---------------UAGUACGGgUGGUGCA----UG- -5'
14615 5' -54.7 NC_003521.1 + 197653 0.66 0.963903
Target:  5'- cGGUGGCgC-UCGUGCggcagcagcgCCACCagcGCGUGCa -3'
miRNA:   3'- -UCAUCGgGuAGUACG----------GGUGG---UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 192484 0.67 0.960495
Target:  5'- cGGUcGGCUgAUCAccgUGUCCACgCugGUACu -3'
miRNA:   3'- -UCA-UCGGgUAGU---ACGGGUG-GugCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.