miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 142571 0.66 0.972882
Target:  5'- --aGGCUCGcCGUGCCCGCCGUGgcCg -3'
miRNA:   3'- ucaUCGGGUaGUACGGGUGGUGCauG- -5'
14615 5' -54.7 NC_003521.1 + 33160 0.66 0.972882
Target:  5'- -uUGGCCuCGUCG-GCCUcgGCCACGUuccACg -3'
miRNA:   3'- ucAUCGG-GUAGUaCGGG--UGGUGCA---UG- -5'
14615 5' -54.7 NC_003521.1 + 127957 0.66 0.972882
Target:  5'- uGUAGagCGUCAgauUGCCCACCuuGUAg -3'
miRNA:   3'- uCAUCggGUAGU---ACGGGUGGugCAUg -5'
14615 5' -54.7 NC_003521.1 + 126080 0.66 0.972882
Target:  5'- uGUGGCCgCGcCAccCCCACgGCGUGCc -3'
miRNA:   3'- uCAUCGG-GUaGUacGGGUGgUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 84900 0.66 0.96832
Target:  5'- gAGUAGgCCGUCAgcGCCCGguCCAgcagggccguauccuCGUGCa -3'
miRNA:   3'- -UCAUCgGGUAGUa-CGGGU--GGU---------------GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 153454 0.66 0.967099
Target:  5'- cGUAGgCCAgcg-GCUCgcagGCCACGUACa -3'
miRNA:   3'- uCAUCgGGUaguaCGGG----UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 179436 0.66 0.967099
Target:  5'- uAGUGGUacuccaCCAaCGUGUCCACCagccgcuugACGUACu -3'
miRNA:   3'- -UCAUCG------GGUaGUACGGGUGG---------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 129843 0.66 0.963903
Target:  5'- --gGGCCCGUggcCGUGCCCuGCUAC-UGCg -3'
miRNA:   3'- ucaUCGGGUA---GUACGGG-UGGUGcAUG- -5'
14615 5' -54.7 NC_003521.1 + 68717 0.67 0.956871
Target:  5'- cGUGGCgCCGUCGgccGCCCG-CACGgACu -3'
miRNA:   3'- uCAUCG-GGUAGUa--CGGGUgGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 101878 0.67 0.956871
Target:  5'- aAGUAGCCguCGUCcugGUCCAUCuuGUACa -3'
miRNA:   3'- -UCAUCGG--GUAGua-CGGGUGGugCAUG- -5'
14615 5' -54.7 NC_003521.1 + 226242 0.67 0.956871
Target:  5'- cGUAGCCCggCGUGUgCAgcuUCACGUcGCa -3'
miRNA:   3'- uCAUCGGGuaGUACGgGU---GGUGCA-UG- -5'
14615 5' -54.7 NC_003521.1 + 192484 0.67 0.960495
Target:  5'- cGGUcGGCUgAUCAccgUGUCCACgCugGUACu -3'
miRNA:   3'- -UCA-UCGGgUAGU---ACGGGUG-GugCAUG- -5'
14615 5' -54.7 NC_003521.1 + 41114 0.67 0.944663
Target:  5'- uGGU-GCUgGUCAcccaguugcUGUCCaACCACGUGCa -3'
miRNA:   3'- -UCAuCGGgUAGU---------ACGGG-UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 119154 0.67 0.960495
Target:  5'- aAGgAGCCCGaCGUGUacuaCACCACGUc- -3'
miRNA:   3'- -UCaUCGGGUaGUACGg---GUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 226552 0.67 0.956871
Target:  5'- -cUGGUCaCAguucCGUGUCUACCACGUAUa -3'
miRNA:   3'- ucAUCGG-GUa---GUACGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 58902 0.67 0.953027
Target:  5'- cGUAGCCCugggcgCGUugggaGCCCugACCugGUAUa -3'
miRNA:   3'- uCAUCGGGua----GUA-----CGGG--UGGugCAUG- -5'
14615 5' -54.7 NC_003521.1 + 18310 0.67 0.953027
Target:  5'- -aUGGaCCCuUCGUGCCCAgCgGCGUGg -3'
miRNA:   3'- ucAUC-GGGuAGUACGGGU-GgUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 132715 0.67 0.948959
Target:  5'- cGUAGCCCc-CAUGCCCAagucCCcaaGCGcUACa -3'
miRNA:   3'- uCAUCGGGuaGUACGGGU----GG---UGC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 21537 0.67 0.953027
Target:  5'- -cUGGCCU-UCAUggGCCCGCuCAUGUGCc -3'
miRNA:   3'- ucAUCGGGuAGUA--CGGGUG-GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 149263 0.67 0.960495
Target:  5'- cGUGGCCaUGUCGUuccgcgucggcGCCCACaagUACGUGCu -3'
miRNA:   3'- uCAUCGG-GUAGUA-----------CGGGUG---GUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.