miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 102001 0.66 0.972882
Target:  5'- cGUAGCcgccgCCAUCAgGCgCGCCAUGgaggGCa -3'
miRNA:   3'- uCAUCG-----GGUAGUaCGgGUGGUGCa---UG- -5'
14615 5' -54.7 NC_003521.1 + 109234 0.66 0.976467
Target:  5'- cGUGGCUCucggugcgcgugaugAUCAggcucugGCCCACCAcCGUGg -3'
miRNA:   3'- uCAUCGGG---------------UAGUa------CGGGUGGU-GCAUg -5'
14615 5' -54.7 NC_003521.1 + 109763 0.74 0.648279
Target:  5'- -cUGGCCCAgcugcugCAUGCCCACUugGggaugGCu -3'
miRNA:   3'- ucAUCGGGUa------GUACGGGUGGugCa----UG- -5'
14615 5' -54.7 NC_003521.1 + 110786 0.66 0.97548
Target:  5'- cGUGGCCa--CGUGCCCcuCCAUG-ACg -3'
miRNA:   3'- uCAUCGGguaGUACGGGu-GGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 111276 0.66 0.97548
Target:  5'- --gGGCCCGcCGUGCcagcgCCGCCGCGa-- -3'
miRNA:   3'- ucaUCGGGUaGUACG-----GGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 111598 0.7 0.836736
Target:  5'- cGUGGCCag-CGgcgccggacUGCCCACCACGcGCc -3'
miRNA:   3'- uCAUCGGguaGU---------ACGGGUGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 112011 0.66 0.97548
Target:  5'- --gAGCCCcaccgggaaaacGUUcugcgGUGCCCcgACCGCGUACu -3'
miRNA:   3'- ucaUCGGG------------UAG-----UACGGG--UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 113760 0.68 0.93538
Target:  5'- cGGUGGCCC----UGCCCggcACCGCGUc- -3'
miRNA:   3'- -UCAUCGGGuaguACGGG---UGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 114511 0.71 0.828499
Target:  5'- cGUGGCCgc-CGUGCCCACCGCc--- -3'
miRNA:   3'- uCAUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 119154 0.67 0.960495
Target:  5'- aAGgAGCCCGaCGUGUacuaCACCACGUc- -3'
miRNA:   3'- -UCaUCGGGUaGUACGg---GUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 120080 0.71 0.820086
Target:  5'- --aGGUCCGUCAgGUCCACCGuguCGUGCu -3'
miRNA:   3'- ucaUCGGGUAGUaCGGGUGGU---GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 120720 0.69 0.908087
Target:  5'- uGUGGCCCuggacCGUGgCCACCAgGgGCa -3'
miRNA:   3'- uCAUCGGGua---GUACgGGUGGUgCaUG- -5'
14615 5' -54.7 NC_003521.1 + 121476 0.68 0.930389
Target:  5'- cGU-GUCCAUgGaggccggaccccUGCCCgACCGCGUGCg -3'
miRNA:   3'- uCAuCGGGUAgU------------ACGGG-UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 123308 0.7 0.860328
Target:  5'- cGUAGCCCAcggaGUGCaUACCGcCGUACg -3'
miRNA:   3'- uCAUCGGGUag--UACGgGUGGU-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 126024 0.68 0.93538
Target:  5'- uGUAGUCCAugaucccgaaggUCGUGUcgccgggcuCCACCACGcUACg -3'
miRNA:   3'- uCAUCGGGU------------AGUACG---------GGUGGUGC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 126080 0.66 0.972882
Target:  5'- uGUGGCCgCGcCAccCCCACgGCGUGCc -3'
miRNA:   3'- uCAUCGG-GUaGUacGGGUGgUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 127853 0.77 0.50772
Target:  5'- --cAGCCCGUCGggcagguUGCCCACCaggaugcgcgGCGUGCa -3'
miRNA:   3'- ucaUCGGGUAGU-------ACGGGUGG----------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 127957 0.66 0.972882
Target:  5'- uGUAGagCGUCAgauUGCCCACCuuGUAg -3'
miRNA:   3'- uCAUCggGUAGU---ACGGGUGGugCAUg -5'
14615 5' -54.7 NC_003521.1 + 128360 0.7 0.875058
Target:  5'- aGGUGGCCCcgCcgggcgcGCCCACCAgGgcCg -3'
miRNA:   3'- -UCAUCGGGuaGua-----CGGGUGGUgCauG- -5'
14615 5' -54.7 NC_003521.1 + 129843 0.66 0.963903
Target:  5'- --gGGCCCGUggcCGUGCCCuGCUAC-UGCg -3'
miRNA:   3'- ucaUCGGGUA---GUACGGG-UGGUGcAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.