Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14616 | 3' | -57.6 | NC_003521.1 | + | 95813 | 0.68 | 0.846853 |
Target: 5'- cGCGUcGGCGauGuCGGCgcgcgaGGCCUCGGUGg -3' miRNA: 3'- -CGUAcUCGU--C-GCCGag----CUGGAGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 184487 | 0.68 | 0.846853 |
Target: 5'- -gGUGuGCGcccugcGCGGC-CGcGCCUCGGUGg -3' miRNA: 3'- cgUACuCGU------CGCCGaGC-UGGAGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 349 | 0.68 | 0.846853 |
Target: 5'- aGCGUGAGCugccggaGGCGGCgccugCGACCgcugcccgccucacgCGGg- -3' miRNA: 3'- -CGUACUCG-------UCGCCGa----GCUGGa--------------GCCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 49050 | 0.68 | 0.839079 |
Target: 5'- aGCAUguuggGAGguGCGGaCagGACC-CGGUGg -3' miRNA: 3'- -CGUA-----CUCguCGCC-GagCUGGaGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 145904 | 0.68 | 0.839079 |
Target: 5'- gGCggGAGCAGCGGCgguucgcaaaCGGCCUUcgaGGa- -3' miRNA: 3'- -CGuaCUCGUCGCCGa---------GCUGGAG---CCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 219079 | 0.68 | 0.831131 |
Target: 5'- uGCAUGAGCAGCGa---GACCuguUCGGg- -3' miRNA: 3'- -CGUACUCGUCGCcgagCUGG---AGCCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 136491 | 0.69 | 0.806313 |
Target: 5'- aGCuUGAGCAgGUGGUUgaCcACCUCGGUGu -3' miRNA: 3'- -CGuACUCGU-CGCCGA--GcUGGAGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 126570 | 0.69 | 0.806313 |
Target: 5'- cCGUGGGCAGCGGgaagccgccgUCGugC-CGGUGg -3' miRNA: 3'- cGUACUCGUCGCCg---------AGCugGaGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 164210 | 0.69 | 0.789026 |
Target: 5'- gGCG-GGGCGGCGGUgguagcggCGGCUggaCGGUGg -3' miRNA: 3'- -CGUaCUCGUCGCCGa-------GCUGGa--GCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 145588 | 0.69 | 0.789026 |
Target: 5'- gGCAcGAcGCGGCGGCcgUGGCCUCGcUGc -3' miRNA: 3'- -CGUaCU-CGUCGCCGa-GCUGGAGCcAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 131045 | 0.7 | 0.761223 |
Target: 5'- --cUGGGCGGCGGCggcgGGCCUcuggacgCGGUGg -3' miRNA: 3'- cguACUCGUCGCCGag--CUGGA-------GCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 113522 | 0.7 | 0.75295 |
Target: 5'- aGCGUGcGCAGCGGCUgGGaucCCUCGc-- -3' miRNA: 3'- -CGUACuCGUCGCCGAgCU---GGAGCcac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 118930 | 0.7 | 0.747391 |
Target: 5'- gGCGUGGGCGGCGGCguccCGucagggccagcGCCcgagacagucccuccUCGGUGu -3' miRNA: 3'- -CGUACUCGUCGCCGa---GC-----------UGG---------------AGCCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 120134 | 0.7 | 0.73429 |
Target: 5'- aGCAccGAGguGCGGCUC-ACCUCcacggaGGUGc -3' miRNA: 3'- -CGUa-CUCguCGCCGAGcUGGAG------CCAC- -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 167141 | 0.71 | 0.715302 |
Target: 5'- aGCucuUGAGCAGCGcCUUGggcGCCUCGGg- -3' miRNA: 3'- -CGu--ACUCGUCGCcGAGC---UGGAGCCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 129180 | 0.71 | 0.709551 |
Target: 5'- gGCGUGcGGCgguuuggguuucgccGGCGGUUCGACCUCGu-- -3' miRNA: 3'- -CGUAC-UCG---------------UCGCCGAGCUGGAGCcac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 138826 | 0.71 | 0.666825 |
Target: 5'- cGCcUGAugGCGGCGGCUaCGGCCUgCGGc- -3' miRNA: 3'- -CGuACU--CGUCGCCGA-GCUGGA-GCCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 145243 | 0.72 | 0.660944 |
Target: 5'- uCGUGAGCGGCuGCcugcagggcgccuccUCGGCCUCGGc- -3' miRNA: 3'- cGUACUCGUCGcCG---------------AGCUGGAGCCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 99950 | 0.72 | 0.637363 |
Target: 5'- cGCAgggGGGCGGCGGC---GCCUCGGc- -3' miRNA: 3'- -CGUa--CUCGUCGCCGagcUGGAGCCac -5' |
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14616 | 3' | -57.6 | NC_003521.1 | + | 69624 | 0.72 | 0.637363 |
Target: 5'- cGCAgagcGAGCAGUGcaccaGCUCGGCgUUGGUGu -3' miRNA: 3'- -CGUa---CUCGUCGC-----CGAGCUGgAGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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