miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 3206 0.67 0.882908
Target:  5'- aGCAacccGAGCGGUGuGUgCGugUUCGGUGa -3'
miRNA:   3'- -CGUa---CUCGUCGC-CGaGCugGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 80982 0.67 0.87609
Target:  5'- cGCGaGuAGCAGCGGCccuUCu-CCUUGGUGu -3'
miRNA:   3'- -CGUaC-UCGUCGCCG---AGcuGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 125836 0.67 0.87609
Target:  5'- cGCGUcGGGCucGCGGUggUCGuacagcGCCUUGGUGg -3'
miRNA:   3'- -CGUA-CUCGu-CGCCG--AGC------UGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 197546 0.67 0.87609
Target:  5'- gGCGgacgaGAGCGGCGGCgagcuccUGAgCUCGGg- -3'
miRNA:   3'- -CGUa----CUCGUCGCCGa------GCUgGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 92005 0.67 0.875397
Target:  5'- aGCggGAGCGgcgaggcGCGGCggCGGCggCGGUGg -3'
miRNA:   3'- -CGuaCUCGU-------CGCCGa-GCUGgaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 131318 0.67 0.86907
Target:  5'- ---cGAGCAGCGGCcggcgCGACCacUCGcUGg -3'
miRNA:   3'- cguaCUCGUCGCCGa----GCUGG--AGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 179049 0.67 0.86907
Target:  5'- cGCcgGAGcCGGCGGCg-GuCC-CGGUGa -3'
miRNA:   3'- -CGuaCUC-GUCGCCGagCuGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 107172 0.67 0.86907
Target:  5'- uGCcgGAGaaggauGUGGCUCcgguuGACCUCGGg- -3'
miRNA:   3'- -CGuaCUCgu----CGCCGAG-----CUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 34537 0.67 0.86907
Target:  5'- cGCGcGAGCGGCGacagaGUUCGGCCUUguggucggGGUGc -3'
miRNA:   3'- -CGUaCUCGUCGC-----CGAGCUGGAG--------CCAC- -5'
14616 3' -57.6 NC_003521.1 + 96785 0.67 0.86907
Target:  5'- cGCcgGcAGCAGCGGC--GGCgCUCGGg- -3'
miRNA:   3'- -CGuaC-UCGUCGCCGagCUG-GAGCCac -5'
14616 3' -57.6 NC_003521.1 + 98629 0.67 0.868357
Target:  5'- gGCGaGAGCGGCGGCggcgguagcggcgUCGACgaCGGc- -3'
miRNA:   3'- -CGUaCUCGUCGCCG-------------AGCUGgaGCCac -5'
14616 3' -57.6 NC_003521.1 + 187783 0.68 0.864764
Target:  5'- aGC-UGGGCuggacccacuucgacAGCGGCggCGACCUgGGUu -3'
miRNA:   3'- -CGuACUCG---------------UCGCCGa-GCUGGAgCCAc -5'
14616 3' -57.6 NC_003521.1 + 128611 0.68 0.861854
Target:  5'- uGCugauUGAGCAGCGcCUCcGCUUCGGa- -3'
miRNA:   3'- -CGu---ACUCGUCGCcGAGcUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 217407 0.68 0.861854
Target:  5'- gGC-UGAGCGGCGGCaUGAagcCGGUGc -3'
miRNA:   3'- -CGuACUCGUCGCCGaGCUggaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 171612 0.68 0.861854
Target:  5'- ---cGAGCGGCGGCgggagugccgcCGACgUCGGg- -3'
miRNA:   3'- cguaCUCGUCGCCGa----------GCUGgAGCCac -5'
14616 3' -57.6 NC_003521.1 + 9662 0.68 0.854446
Target:  5'- cGCcgGAGCAGCGGaucugUCG-CCUCcaaGUGa -3'
miRNA:   3'- -CGuaCUCGUCGCCg----AGCuGGAGc--CAC- -5'
14616 3' -57.6 NC_003521.1 + 34498 0.68 0.854446
Target:  5'- aGCA-GAGCAGCGaGCgcagguagCGGCCgCGGg- -3'
miRNA:   3'- -CGUaCUCGUCGC-CGa-------GCUGGaGCCac -5'
14616 3' -57.6 NC_003521.1 + 119593 0.68 0.854446
Target:  5'- cGC-UGGGCGGCGGgugcagcguCUCGugCUgcaGGUGg -3'
miRNA:   3'- -CGuACUCGUCGCC---------GAGCugGAg--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 104696 0.68 0.854446
Target:  5'- cCGUGGGCGGCGucgacgugccCUCGACCgCGGUc -3'
miRNA:   3'- cGUACUCGUCGCc---------GAGCUGGaGCCAc -5'
14616 3' -57.6 NC_003521.1 + 228745 0.68 0.851431
Target:  5'- -gGUGAGCAGCGGCgugcgcaUCuugucggcguagauGACCUCcaGGUGc -3'
miRNA:   3'- cgUACUCGUCGCCG-------AG--------------CUGGAG--CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.