miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 220505 0.66 0.913848
Target:  5'- ---aGAGCAGCaGCguggUGGCCUCcuGGUGc -3'
miRNA:   3'- cguaCUCGUCGcCGa---GCUGGAG--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 103646 0.66 0.913848
Target:  5'- aGCggGGGCAGCucGGCggCGGCCgcugCGGc- -3'
miRNA:   3'- -CGuaCUCGUCG--CCGa-GCUGGa---GCCac -5'
14616 3' -57.6 NC_003521.1 + 96991 0.66 0.913848
Target:  5'- cGCAgaGGGCGGCGcGCaCGAUCUCGcUGg -3'
miRNA:   3'- -CGUa-CUCGUCGC-CGaGCUGGAGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 165566 0.66 0.913848
Target:  5'- uGCAUGuGCAGcCGGCcCu-CCUCGGc- -3'
miRNA:   3'- -CGUACuCGUC-GCCGaGcuGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 216372 0.66 0.90809
Target:  5'- gGCA-GAGCAGaagGGCU--GCCUCGGg- -3'
miRNA:   3'- -CGUaCUCGUCg--CCGAgcUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 152677 0.66 0.90809
Target:  5'- uGCGUcAGCAGCcGCUCcGCggCUCGGUGc -3'
miRNA:   3'- -CGUAcUCGUCGcCGAGcUG--GAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 123641 0.66 0.90809
Target:  5'- ---cGGGCGGCGGCagCGACggCGGg- -3'
miRNA:   3'- cguaCUCGUCGCCGa-GCUGgaGCCac -5'
14616 3' -57.6 NC_003521.1 + 175429 0.66 0.90809
Target:  5'- cGCGucUGAGUGGCGuGCUCGGCguacgaUCGGc- -3'
miRNA:   3'- -CGU--ACUCGUCGC-CGAGCUGg-----AGCCac -5'
14616 3' -57.6 NC_003521.1 + 16507 0.67 0.902115
Target:  5'- aGCAcGGGCuGCGGCgcUCGG-CUCGGcUGg -3'
miRNA:   3'- -CGUaCUCGuCGCCG--AGCUgGAGCC-AC- -5'
14616 3' -57.6 NC_003521.1 + 196999 0.67 0.902115
Target:  5'- cGCGgccGGCGGCGGCU-GACC-CGGcUGc -3'
miRNA:   3'- -CGUac-UCGUCGCCGAgCUGGaGCC-AC- -5'
14616 3' -57.6 NC_003521.1 + 76217 0.67 0.902115
Target:  5'- gGUAUGAGUGGCGGC--GGCC--GGUGg -3'
miRNA:   3'- -CGUACUCGUCGCCGagCUGGagCCAC- -5'
14616 3' -57.6 NC_003521.1 + 207196 0.67 0.902115
Target:  5'- -uGUGAGCcgcucGGCGGCaUCGuCCUcCGGUu -3'
miRNA:   3'- cgUACUCG-----UCGCCG-AGCuGGA-GCCAc -5'
14616 3' -57.6 NC_003521.1 + 212964 0.67 0.90028
Target:  5'- gGCucUGAGgauuuaucuuugccCAGCGGCUCGcCCU-GGUGa -3'
miRNA:   3'- -CGu-ACUC--------------GUCGCCGAGCuGGAgCCAC- -5'
14616 3' -57.6 NC_003521.1 + 207442 0.67 0.895924
Target:  5'- ---aGAGCGGCGGCUggCGGCgUgugugagugaCGGUGa -3'
miRNA:   3'- cguaCUCGUCGCCGA--GCUGgA----------GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 120540 0.67 0.895924
Target:  5'- ---cGAGCgcGGUGGCUCaACCcCGGUGc -3'
miRNA:   3'- cguaCUCG--UCGCCGAGcUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 113567 0.67 0.895924
Target:  5'- cGCGaggagGAcGCGGUggGGCUgGGCCUCGGg- -3'
miRNA:   3'- -CGUa----CU-CGUCG--CCGAgCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 200577 0.67 0.88952
Target:  5'- aGCGUGAGCugccggaGGCGGCccugCGACCgcugcccgccucacgCGGg- -3'
miRNA:   3'- -CGUACUCG-------UCGCCGa---GCUGGa--------------GCCac -5'
14616 3' -57.6 NC_003521.1 + 119826 0.67 0.88952
Target:  5'- ---gGAGCAGCGGCUcCGACUcCGa-- -3'
miRNA:   3'- cguaCUCGUCGCCGA-GCUGGaGCcac -5'
14616 3' -57.6 NC_003521.1 + 68020 0.67 0.88952
Target:  5'- uGCGUGAGCcucaccgccacgGGCGGCgugguccgcggCGcCCcCGGUGg -3'
miRNA:   3'- -CGUACUCG------------UCGCCGa----------GCuGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 128524 0.67 0.882908
Target:  5'- cGC-UGGGCAgguGCGGCUggccCGACgUCaGGUGg -3'
miRNA:   3'- -CGuACUCGU---CGCCGA----GCUGgAG-CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.