miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 113522 0.7 0.75295
Target:  5'- aGCGUGcGCAGCGGCUgGGaucCCUCGc-- -3'
miRNA:   3'- -CGUACuCGUCGCCGAgCU---GGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 131045 0.7 0.761223
Target:  5'- --cUGGGCGGCGGCggcgGGCCUcuggacgCGGUGg -3'
miRNA:   3'- cguACUCGUCGCCGag--CUGGA-------GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 164210 0.69 0.789026
Target:  5'- gGCG-GGGCGGCGGUgguagcggCGGCUggaCGGUGg -3'
miRNA:   3'- -CGUaCUCGUCGCCGa-------GCUGGa--GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 145588 0.69 0.789026
Target:  5'- gGCAcGAcGCGGCGGCcgUGGCCUCGcUGc -3'
miRNA:   3'- -CGUaCU-CGUCGCCGa-GCUGGAGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 126570 0.69 0.806313
Target:  5'- cCGUGGGCAGCGGgaagccgccgUCGugC-CGGUGg -3'
miRNA:   3'- cGUACUCGUCGCCg---------AGCugGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 136491 0.69 0.806313
Target:  5'- aGCuUGAGCAgGUGGUUgaCcACCUCGGUGu -3'
miRNA:   3'- -CGuACUCGU-CGCCGA--GcUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 219079 0.68 0.831131
Target:  5'- uGCAUGAGCAGCGa---GACCuguUCGGg- -3'
miRNA:   3'- -CGUACUCGUCGCcgagCUGG---AGCCac -5'
14616 3' -57.6 NC_003521.1 + 145904 0.68 0.839079
Target:  5'- gGCggGAGCAGCGGCgguucgcaaaCGGCCUUcgaGGa- -3'
miRNA:   3'- -CGuaCUCGUCGCCGa---------GCUGGAG---CCac -5'
14616 3' -57.6 NC_003521.1 + 49050 0.68 0.839079
Target:  5'- aGCAUguuggGAGguGCGGaCagGACC-CGGUGg -3'
miRNA:   3'- -CGUA-----CUCguCGCC-GagCUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 184487 0.68 0.846853
Target:  5'- -gGUGuGCGcccugcGCGGC-CGcGCCUCGGUGg -3'
miRNA:   3'- cgUACuCGU------CGCCGaGC-UGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 95813 0.68 0.846853
Target:  5'- cGCGUcGGCGauGuCGGCgcgcgaGGCCUCGGUGg -3'
miRNA:   3'- -CGUAcUCGU--C-GCCGag----CUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 349 0.68 0.846853
Target:  5'- aGCGUGAGCugccggaGGCGGCgccugCGACCgcugcccgccucacgCGGg- -3'
miRNA:   3'- -CGUACUCG-------UCGCCGa----GCUGGa--------------GCCac -5'
14616 3' -57.6 NC_003521.1 + 228745 0.68 0.851431
Target:  5'- -gGUGAGCAGCGGCgugcgcaUCuugucggcguagauGACCUCcaGGUGc -3'
miRNA:   3'- cgUACUCGUCGCCG-------AG--------------CUGGAG--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 104696 0.68 0.854446
Target:  5'- cCGUGGGCGGCGucgacgugccCUCGACCgCGGUc -3'
miRNA:   3'- cGUACUCGUCGCc---------GAGCUGGaGCCAc -5'
14616 3' -57.6 NC_003521.1 + 34498 0.68 0.854446
Target:  5'- aGCA-GAGCAGCGaGCgcagguagCGGCCgCGGg- -3'
miRNA:   3'- -CGUaCUCGUCGC-CGa-------GCUGGaGCCac -5'
14616 3' -57.6 NC_003521.1 + 9662 0.68 0.854446
Target:  5'- cGCcgGAGCAGCGGaucugUCG-CCUCcaaGUGa -3'
miRNA:   3'- -CGuaCUCGUCGCCg----AGCuGGAGc--CAC- -5'
14616 3' -57.6 NC_003521.1 + 119593 0.68 0.854446
Target:  5'- cGC-UGGGCGGCGGgugcagcguCUCGugCUgcaGGUGg -3'
miRNA:   3'- -CGuACUCGUCGCC---------GAGCugGAg--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 171612 0.68 0.861854
Target:  5'- ---cGAGCGGCGGCgggagugccgcCGACgUCGGg- -3'
miRNA:   3'- cguaCUCGUCGCCGa----------GCUGgAGCCac -5'
14616 3' -57.6 NC_003521.1 + 128611 0.68 0.861854
Target:  5'- uGCugauUGAGCAGCGcCUCcGCUUCGGa- -3'
miRNA:   3'- -CGu---ACUCGUCGCcGAGcUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 217407 0.68 0.861854
Target:  5'- gGC-UGAGCGGCGGCaUGAagcCGGUGc -3'
miRNA:   3'- -CGuACUCGUCGCCGaGCUggaGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.