miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 218034 0.66 0.929802
Target:  5'- --uUGGGCGGCGGCggCGuCCgcaGGUa -3'
miRNA:   3'- cguACUCGUCGCCGa-GCuGGag-CCAc -5'
14616 3' -57.6 NC_003521.1 + 61110 0.66 0.929802
Target:  5'- cGCAgcUGAGCGGCgagacGGUgaagcccaacaUCGACCUgcUGGUGc -3'
miRNA:   3'- -CGU--ACUCGUCG-----CCG-----------AGCUGGA--GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 136055 0.66 0.918296
Target:  5'- uGCGaccUGGGCAGCGGCUgCGcgcucaucuccacGCuggagggCUCGGUGu -3'
miRNA:   3'- -CGU---ACUCGUCGCCGA-GC-------------UG-------GAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 226367 0.66 0.913848
Target:  5'- cGCggGAGCGGCGGCUgaCGccGCCgcaGGg- -3'
miRNA:   3'- -CGuaCUCGUCGCCGA--GC--UGGag-CCac -5'
14616 3' -57.6 NC_003521.1 + 140044 0.66 0.913848
Target:  5'- cCAUGAGCGGCaGGaa-GGCCUCGuUGc -3'
miRNA:   3'- cGUACUCGUCG-CCgagCUGGAGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 238444 0.66 0.913848
Target:  5'- ---cGGGCAGgaGGCgcagggCGGCCUCGGc- -3'
miRNA:   3'- cguaCUCGUCg-CCGa-----GCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 175429 0.66 0.90809
Target:  5'- cGCGucUGAGUGGCGuGCUCGGCguacgaUCGGc- -3'
miRNA:   3'- -CGU--ACUCGUCGC-CGAGCUGg-----AGCCac -5'
14616 3' -57.6 NC_003521.1 + 163205 0.66 0.929802
Target:  5'- gGCGgcGGCAGCGGCaguagcuccggCGGCCUgGGa- -3'
miRNA:   3'- -CGUacUCGUCGCCGa----------GCUGGAgCCac -5'
14616 3' -57.6 NC_003521.1 + 16507 0.67 0.902115
Target:  5'- aGCAcGGGCuGCGGCgcUCGG-CUCGGcUGg -3'
miRNA:   3'- -CGUaCUCGuCGCCG--AGCUgGAGCC-AC- -5'
14616 3' -57.6 NC_003521.1 + 125836 0.67 0.87609
Target:  5'- cGCGUcGGGCucGCGGUggUCGuacagcGCCUUGGUGg -3'
miRNA:   3'- -CGUA-CUCGu-CGCCG--AGC------UGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 80982 0.67 0.87609
Target:  5'- cGCGaGuAGCAGCGGCccuUCu-CCUUGGUGu -3'
miRNA:   3'- -CGUaC-UCGUCGCCG---AGcuGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 119826 0.67 0.88952
Target:  5'- ---gGAGCAGCGGCUcCGACUcCGa-- -3'
miRNA:   3'- cguaCUCGUCGCCGA-GCUGGaGCcac -5'
14616 3' -57.6 NC_003521.1 + 68020 0.67 0.88952
Target:  5'- uGCGUGAGCcucaccgccacgGGCGGCgugguccgcggCGcCCcCGGUGg -3'
miRNA:   3'- -CGUACUCG------------UCGCCGa----------GCuGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 76217 0.67 0.902115
Target:  5'- gGUAUGAGUGGCGGC--GGCC--GGUGg -3'
miRNA:   3'- -CGUACUCGUCGCCGagCUGGagCCAC- -5'
14616 3' -57.6 NC_003521.1 + 98629 0.67 0.868357
Target:  5'- gGCGaGAGCGGCGGCggcgguagcggcgUCGACgaCGGc- -3'
miRNA:   3'- -CGUaCUCGUCGCCG-------------AGCUGgaGCCac -5'
14616 3' -57.6 NC_003521.1 + 96785 0.67 0.86907
Target:  5'- cGCcgGcAGCAGCGGC--GGCgCUCGGg- -3'
miRNA:   3'- -CGuaC-UCGUCGCCGagCUG-GAGCCac -5'
14616 3' -57.6 NC_003521.1 + 107172 0.67 0.86907
Target:  5'- uGCcgGAGaaggauGUGGCUCcgguuGACCUCGGg- -3'
miRNA:   3'- -CGuaCUCgu----CGCCGAG-----CUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 34537 0.67 0.86907
Target:  5'- cGCGcGAGCGGCGacagaGUUCGGCCUUguggucggGGUGc -3'
miRNA:   3'- -CGUaCUCGUCGC-----CGAGCUGGAG--------CCAC- -5'
14616 3' -57.6 NC_003521.1 + 92005 0.67 0.875397
Target:  5'- aGCggGAGCGgcgaggcGCGGCggCGGCggCGGUGg -3'
miRNA:   3'- -CGuaCUCGU-------CGCCGa-GCUGgaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 197546 0.67 0.87609
Target:  5'- gGCGgacgaGAGCGGCGGCgagcuccUGAgCUCGGg- -3'
miRNA:   3'- -CGUa----CUCGUCGCCGa------GCUgGAGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.