miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 139460 0.66 0.929802
Target:  5'- uGUAgcGGCAGCGGaaCUCGACCUCcuUGa -3'
miRNA:   3'- -CGUacUCGUCGCC--GAGCUGGAGccAC- -5'
14616 3' -57.6 NC_003521.1 + 96991 0.66 0.913848
Target:  5'- cGCAgaGGGCGGCGcGCaCGAUCUCGcUGg -3'
miRNA:   3'- -CGUa-CUCGUCGC-CGaGCUGGAGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 38216 0.66 0.913848
Target:  5'- ---cGGGCAGgaGGCgcagggCGGCCUCGGc- -3'
miRNA:   3'- cguaCUCGUCg-CCGa-----GCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 74577 0.66 0.919386
Target:  5'- gGCGacgGAGCGGCGGCgcggCGuCCcgCGGc- -3'
miRNA:   3'- -CGUa--CUCGUCGCCGa---GCuGGa-GCCac -5'
14616 3' -57.6 NC_003521.1 + 163205 0.66 0.929802
Target:  5'- gGCGgcGGCAGCGGCaguagcuccggCGGCCUgGGa- -3'
miRNA:   3'- -CGUacUCGUCGCCGa----------GCUGGAgCCac -5'
14616 3' -57.6 NC_003521.1 + 216372 0.66 0.90809
Target:  5'- gGCA-GAGCAGaagGGCU--GCCUCGGg- -3'
miRNA:   3'- -CGUaCUCGUCg--CCGAgcUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 152677 0.66 0.90809
Target:  5'- uGCGUcAGCAGCcGCUCcGCggCUCGGUGc -3'
miRNA:   3'- -CGUAcUCGUCGcCGAGcUG--GAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 220505 0.66 0.913848
Target:  5'- ---aGAGCAGCaGCguggUGGCCUCcuGGUGc -3'
miRNA:   3'- cguaCUCGUCGcCGa---GCUGGAG--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 238444 0.66 0.913848
Target:  5'- ---cGGGCAGgaGGCgcagggCGGCCUCGGc- -3'
miRNA:   3'- cguaCUCGUCg-CCGa-----GCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 85071 0.66 0.929802
Target:  5'- aGCGUGAGCAGCGuCUCG----CGGUa -3'
miRNA:   3'- -CGUACUCGUCGCcGAGCuggaGCCAc -5'
14616 3' -57.6 NC_003521.1 + 175429 0.66 0.90809
Target:  5'- cGCGucUGAGUGGCGuGCUCGGCguacgaUCGGc- -3'
miRNA:   3'- -CGU--ACUCGUCGC-CGAGCUGg-----AGCCac -5'
14616 3' -57.6 NC_003521.1 + 134998 0.66 0.924704
Target:  5'- aGCAgGGGCAggccGUGGCgUCGcccuUCUCGGUGa -3'
miRNA:   3'- -CGUaCUCGU----CGCCG-AGCu---GGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 226367 0.66 0.913848
Target:  5'- cGCggGAGCGGCGGCUgaCGccGCCgcaGGg- -3'
miRNA:   3'- -CGuaCUCGUCGCCGA--GC--UGGag-CCac -5'
14616 3' -57.6 NC_003521.1 + 80866 0.66 0.929802
Target:  5'- gGC-UGGGUAGCuGGCacu-CCUCGGUGc -3'
miRNA:   3'- -CGuACUCGUCG-CCGagcuGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 218034 0.66 0.929802
Target:  5'- --uUGGGCGGCGGCggCGuCCgcaGGUa -3'
miRNA:   3'- cguACUCGUCGCCGa-GCuGGag-CCAc -5'
14616 3' -57.6 NC_003521.1 + 165566 0.66 0.913848
Target:  5'- uGCAUGuGCAGcCGGCcCu-CCUCGGc- -3'
miRNA:   3'- -CGUACuCGUC-GCCGaGcuGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 103646 0.66 0.913848
Target:  5'- aGCggGGGCAGCucGGCggCGGCCgcugCGGc- -3'
miRNA:   3'- -CGuaCUCGUCG--CCGa-GCUGGa---GCCac -5'
14616 3' -57.6 NC_003521.1 + 123641 0.66 0.90809
Target:  5'- ---cGGGCGGCGGCagCGACggCGGg- -3'
miRNA:   3'- cguaCUCGUCGCCGa-GCUGgaGCCac -5'
14616 3' -57.6 NC_003521.1 + 136055 0.66 0.918296
Target:  5'- uGCGaccUGGGCAGCGGCUgCGcgcucaucuccacGCuggagggCUCGGUGu -3'
miRNA:   3'- -CGU---ACUCGUCGCCGA-GC-------------UG-------GAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 61110 0.66 0.929802
Target:  5'- cGCAgcUGAGCGGCgagacGGUgaagcccaacaUCGACCUgcUGGUGc -3'
miRNA:   3'- -CGU--ACUCGUCG-----CCG-----------AGCUGGA--GCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.