miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 119593 0.68 0.854446
Target:  5'- cGC-UGGGCGGCGGgugcagcguCUCGugCUgcaGGUGg -3'
miRNA:   3'- -CGuACUCGUCGCC---------GAGCugGAg--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 131045 0.7 0.761223
Target:  5'- --cUGGGCGGCGGCggcgGGCCUcuggacgCGGUGg -3'
miRNA:   3'- cguACUCGUCGCCGag--CUGGA-------GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 145588 0.69 0.789026
Target:  5'- gGCAcGAcGCGGCGGCcgUGGCCUCGcUGc -3'
miRNA:   3'- -CGUaCU-CGUCGCCGa-GCUGGAGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 126570 0.69 0.806313
Target:  5'- cCGUGGGCAGCGGgaagccgccgUCGugC-CGGUGg -3'
miRNA:   3'- cGUACUCGUCGCCg---------AGCugGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 219079 0.68 0.831131
Target:  5'- uGCAUGAGCAGCGa---GACCuguUCGGg- -3'
miRNA:   3'- -CGUACUCGUCGCcgagCUGG---AGCCac -5'
14616 3' -57.6 NC_003521.1 + 49050 0.68 0.839079
Target:  5'- aGCAUguuggGAGguGCGGaCagGACC-CGGUGg -3'
miRNA:   3'- -CGUA-----CUCguCGCC-GagCUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 145904 0.68 0.839079
Target:  5'- gGCggGAGCAGCGGCgguucgcaaaCGGCCUUcgaGGa- -3'
miRNA:   3'- -CGuaCUCGUCGCCGa---------GCUGGAG---CCac -5'
14616 3' -57.6 NC_003521.1 + 228745 0.68 0.851431
Target:  5'- -gGUGAGCAGCGGCgugcgcaUCuugucggcguagauGACCUCcaGGUGc -3'
miRNA:   3'- cgUACUCGUCGCCG-------AG--------------CUGGAG--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 34498 0.68 0.854446
Target:  5'- aGCA-GAGCAGCGaGCgcagguagCGGCCgCGGg- -3'
miRNA:   3'- -CGUaCUCGUCGC-CGa-------GCUGGaGCCac -5'
14616 3' -57.6 NC_003521.1 + 113522 0.7 0.75295
Target:  5'- aGCGUGcGCAGCGGCUgGGaucCCUCGc-- -3'
miRNA:   3'- -CGUACuCGUCGCCGAgCU---GGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 118930 0.7 0.747391
Target:  5'- gGCGUGGGCGGCGGCguccCGucagggccagcGCCcgagacagucccuccUCGGUGu -3'
miRNA:   3'- -CGUACUCGUCGCCGa---GC-----------UGG---------------AGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 120134 0.7 0.73429
Target:  5'- aGCAccGAGguGCGGCUC-ACCUCcacggaGGUGc -3'
miRNA:   3'- -CGUa-CUCguCGCCGAGcUGGAG------CCAC- -5'
14616 3' -57.6 NC_003521.1 + 73140 0.75 0.465705
Target:  5'- gGCggGGGCAGCGGCggcggCGccGCCUCGGc- -3'
miRNA:   3'- -CGuaCUCGUCGCCGa----GC--UGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 127537 0.75 0.492961
Target:  5'- aGCAUGuGCGGCGGCagcacgccgUCGGCCa-GGUGc -3'
miRNA:   3'- -CGUACuCGUCGCCG---------AGCUGGagCCAC- -5'
14616 3' -57.6 NC_003521.1 + 77709 0.73 0.588274
Target:  5'- cCGUG-GCGGCguuguuGGCgacggCGGCCUCGGUGg -3'
miRNA:   3'- cGUACuCGUCG------CCGa----GCUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 28306 0.72 0.607866
Target:  5'- ---aGAGCAGCGGCagCGACCcCGGc- -3'
miRNA:   3'- cguaCUCGUCGCCGa-GCUGGaGCCac -5'
14616 3' -57.6 NC_003521.1 + 116007 0.72 0.607866
Target:  5'- cGCAgGAGCAGCGuCUCcaGGCCgCGGUGg -3'
miRNA:   3'- -CGUaCUCGUCGCcGAG--CUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 69624 0.72 0.637363
Target:  5'- cGCAgagcGAGCAGUGcaccaGCUCGGCgUUGGUGu -3'
miRNA:   3'- -CGUa---CUCGUCGC-----CGAGCUGgAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 145243 0.72 0.660944
Target:  5'- uCGUGAGCGGCuGCcugcagggcgccuccUCGGCCUCGGc- -3'
miRNA:   3'- cGUACUCGUCGcCG---------------AGCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 138826 0.71 0.666825
Target:  5'- cGCcUGAugGCGGCGGCUaCGGCCUgCGGc- -3'
miRNA:   3'- -CGuACU--CGUCGCCGA-GCUGGA-GCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.