miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 234852 0.74 0.520926
Target:  5'- aGCGUGGGCAuCGGCgUCGugUUCGGaUGa -3'
miRNA:   3'- -CGUACUCGUcGCCG-AGCugGAGCC-AC- -5'
14616 3' -57.6 NC_003521.1 + 187783 0.68 0.864764
Target:  5'- aGC-UGGGCuggacccacuucgacAGCGGCggCGACCUgGGUu -3'
miRNA:   3'- -CGuACUCG---------------UCGCCGa-GCUGGAgCCAc -5'
14616 3' -57.6 NC_003521.1 + 131318 0.67 0.86907
Target:  5'- ---cGAGCAGCGGCcggcgCGACCacUCGcUGg -3'
miRNA:   3'- cguaCUCGUCGCCGa----GCUGG--AGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 85071 0.66 0.929802
Target:  5'- aGCGUGAGCAGCGuCUCG----CGGUa -3'
miRNA:   3'- -CGUACUCGUCGCcGAGCuggaGCCAc -5'
14616 3' -57.6 NC_003521.1 + 124458 0.72 0.607866
Target:  5'- cGCGgcAGCAGCaGCUCGGCCUCGu-- -3'
miRNA:   3'- -CGUacUCGUCGcCGAGCUGGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 76361 0.72 0.621624
Target:  5'- gGCGgcGGCAGCGGCgaccgugacggccgCGGCCgCGGUGg -3'
miRNA:   3'- -CGUacUCGUCGCCGa-------------GCUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 129180 0.71 0.709551
Target:  5'- gGCGUGcGGCgguuuggguuucgccGGCGGUUCGACCUCGu-- -3'
miRNA:   3'- -CGUAC-UCG---------------UCGCCGAGCUGGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 167141 0.71 0.715302
Target:  5'- aGCucuUGAGCAGCGcCUUGggcGCCUCGGg- -3'
miRNA:   3'- -CGu--ACUCGUCGCcGAGC---UGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 349 0.68 0.846853
Target:  5'- aGCGUGAGCugccggaGGCGGCgccugCGACCgcugcccgccucacgCGGg- -3'
miRNA:   3'- -CGUACUCG-------UCGCCGa----GCUGGa--------------GCCac -5'
14616 3' -57.6 NC_003521.1 + 171612 0.68 0.861854
Target:  5'- ---cGAGCGGCGGCgggagugccgcCGACgUCGGg- -3'
miRNA:   3'- cguaCUCGUCGCCGa----------GCUGgAGCCac -5'
14616 3' -57.6 NC_003521.1 + 95813 0.68 0.846853
Target:  5'- cGCGUcGGCGauGuCGGCgcgcgaGGCCUCGGUGg -3'
miRNA:   3'- -CGUAcUCGU--C-GCCGag----CUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 136491 0.69 0.806313
Target:  5'- aGCuUGAGCAgGUGGUUgaCcACCUCGGUGu -3'
miRNA:   3'- -CGuACUCGU-CGCCGA--GcUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 160279 0.74 0.539909
Target:  5'- uCAUGAGCGGCcugGGCUCcGCCggcaaggCGGUGg -3'
miRNA:   3'- cGUACUCGUCG---CCGAGcUGGa------GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 9662 0.68 0.854446
Target:  5'- cGCcgGAGCAGCGGaucugUCG-CCUCcaaGUGa -3'
miRNA:   3'- -CGuaCUCGUCGCCg----AGCuGGAGc--CAC- -5'
14616 3' -57.6 NC_003521.1 + 107336 0.73 0.568799
Target:  5'- ---cGcAGCAGCGGCgccaggugauccUCGACCUCGGg- -3'
miRNA:   3'- cguaC-UCGUCGCCG------------AGCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 164210 0.69 0.789026
Target:  5'- gGCG-GGGCGGCGGUgguagcggCGGCUggaCGGUGg -3'
miRNA:   3'- -CGUaCUCGUCGCCGa-------GCUGGa--GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 128611 0.68 0.861854
Target:  5'- uGCugauUGAGCAGCGcCUCcGCUUCGGa- -3'
miRNA:   3'- -CGu---ACUCGUCGCcGAGcUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 98629 0.67 0.868357
Target:  5'- gGCGaGAGCGGCGGCggcgguagcggcgUCGACgaCGGc- -3'
miRNA:   3'- -CGUaCUCGUCGCCG-------------AGCUGgaGCCac -5'
14616 3' -57.6 NC_003521.1 + 123715 0.73 0.588274
Target:  5'- gGCGgcUGAGCGGCGGaggCGGCCUCGu-- -3'
miRNA:   3'- -CGU--ACUCGUCGCCga-GCUGGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 99950 0.72 0.637363
Target:  5'- cGCAgggGGGCGGCGGC---GCCUCGGc- -3'
miRNA:   3'- -CGUa--CUCGUCGCCGagcUGGAGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.