miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 222678 1.09 0.003224
Target:  5'- aGCAUGAGCAGCGGCUCGACCUCGGUGc -3'
miRNA:   3'- -CGUACUCGUCGCCGAGCUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 73140 0.75 0.465705
Target:  5'- gGCggGGGCAGCGGCggcggCGccGCCUCGGc- -3'
miRNA:   3'- -CGuaCUCGUCGCCGa----GC--UGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 127537 0.75 0.492961
Target:  5'- aGCAUGuGCGGCGGCagcacgccgUCGGCCa-GGUGc -3'
miRNA:   3'- -CGUACuCGUCGCCG---------AGCUGGagCCAC- -5'
14616 3' -57.6 NC_003521.1 + 234852 0.74 0.520926
Target:  5'- aGCGUGGGCAuCGGCgUCGugUUCGGaUGa -3'
miRNA:   3'- -CGUACUCGUcGCCG-AGCugGAGCC-AC- -5'
14616 3' -57.6 NC_003521.1 + 160279 0.74 0.539909
Target:  5'- uCAUGAGCGGCcugGGCUCcGCCggcaaggCGGUGg -3'
miRNA:   3'- cGUACUCGUCG---CCGAGcUGGa------GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 107336 0.73 0.568799
Target:  5'- ---cGcAGCAGCGGCgccaggugauccUCGACCUCGGg- -3'
miRNA:   3'- cguaC-UCGUCGCCG------------AGCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 123715 0.73 0.588274
Target:  5'- gGCGgcUGAGCGGCGGaggCGGCCUCGu-- -3'
miRNA:   3'- -CGU--ACUCGUCGCCga-GCUGGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 77709 0.73 0.588274
Target:  5'- cCGUG-GCGGCguuguuGGCgacggCGGCCUCGGUGg -3'
miRNA:   3'- cGUACuCGUCG------CCGa----GCUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 116007 0.72 0.607866
Target:  5'- cGCAgGAGCAGCGuCUCcaGGCCgCGGUGg -3'
miRNA:   3'- -CGUaCUCGUCGCcGAG--CUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 124458 0.72 0.607866
Target:  5'- cGCGgcAGCAGCaGCUCGGCCUCGu-- -3'
miRNA:   3'- -CGUacUCGUCGcCGAGCUGGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 28306 0.72 0.607866
Target:  5'- ---aGAGCAGCGGCagCGACCcCGGc- -3'
miRNA:   3'- cguaCUCGUCGCCGa-GCUGGaGCCac -5'
14616 3' -57.6 NC_003521.1 + 76361 0.72 0.621624
Target:  5'- gGCGgcGGCAGCGGCgaccgugacggccgCGGCCgCGGUGg -3'
miRNA:   3'- -CGUacUCGUCGCCGa-------------GCUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 69624 0.72 0.637363
Target:  5'- cGCAgagcGAGCAGUGcaccaGCUCGGCgUUGGUGu -3'
miRNA:   3'- -CGUa---CUCGUCGC-----CGAGCUGgAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 99950 0.72 0.637363
Target:  5'- cGCAgggGGGCGGCGGC---GCCUCGGc- -3'
miRNA:   3'- -CGUa--CUCGUCGCCGagcUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 145243 0.72 0.660944
Target:  5'- uCGUGAGCGGCuGCcugcagggcgccuccUCGGCCUCGGc- -3'
miRNA:   3'- cGUACUCGUCGcCG---------------AGCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 138826 0.71 0.666825
Target:  5'- cGCcUGAugGCGGCGGCUaCGGCCUgCGGc- -3'
miRNA:   3'- -CGuACU--CGUCGCCGA-GCUGGA-GCCac -5'
14616 3' -57.6 NC_003521.1 + 129180 0.71 0.709551
Target:  5'- gGCGUGcGGCgguuuggguuucgccGGCGGUUCGACCUCGu-- -3'
miRNA:   3'- -CGUAC-UCG---------------UCGCCGAGCUGGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 167141 0.71 0.715302
Target:  5'- aGCucuUGAGCAGCGcCUUGggcGCCUCGGg- -3'
miRNA:   3'- -CGu--ACUCGUCGCcGAGC---UGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 120134 0.7 0.73429
Target:  5'- aGCAccGAGguGCGGCUC-ACCUCcacggaGGUGc -3'
miRNA:   3'- -CGUa-CUCguCGCCGAGcUGGAG------CCAC- -5'
14616 3' -57.6 NC_003521.1 + 118930 0.7 0.747391
Target:  5'- gGCGUGGGCGGCGGCguccCGucagggccagcGCCcgagacagucccuccUCGGUGu -3'
miRNA:   3'- -CGUACUCGUCGCCGa---GC-----------UGG---------------AGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.