miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 80982 0.67 0.87609
Target:  5'- cGCGaGuAGCAGCGGCccuUCu-CCUUGGUGu -3'
miRNA:   3'- -CGUaC-UCGUCGCCG---AGcuGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 85071 0.66 0.929802
Target:  5'- aGCGUGAGCAGCGuCUCG----CGGUa -3'
miRNA:   3'- -CGUACUCGUCGCcGAGCuggaGCCAc -5'
14616 3' -57.6 NC_003521.1 + 85112 0.66 0.924704
Target:  5'- gGCGgcGGCAGCGGCgggCGGcacguagccucCCUCGGc- -3'
miRNA:   3'- -CGUacUCGUCGCCGa--GCU-----------GGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 92005 0.67 0.875397
Target:  5'- aGCggGAGCGgcgaggcGCGGCggCGGCggCGGUGg -3'
miRNA:   3'- -CGuaCUCGU-------CGCCGa-GCUGgaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 95813 0.68 0.846853
Target:  5'- cGCGUcGGCGauGuCGGCgcgcgaGGCCUCGGUGg -3'
miRNA:   3'- -CGUAcUCGU--C-GCCGag----CUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 96785 0.67 0.86907
Target:  5'- cGCcgGcAGCAGCGGC--GGCgCUCGGg- -3'
miRNA:   3'- -CGuaC-UCGUCGCCGagCUG-GAGCCac -5'
14616 3' -57.6 NC_003521.1 + 96991 0.66 0.913848
Target:  5'- cGCAgaGGGCGGCGcGCaCGAUCUCGcUGg -3'
miRNA:   3'- -CGUa-CUCGUCGC-CGaGCUGGAGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 98629 0.67 0.868357
Target:  5'- gGCGaGAGCGGCGGCggcgguagcggcgUCGACgaCGGc- -3'
miRNA:   3'- -CGUaCUCGUCGCCG-------------AGCUGgaGCCac -5'
14616 3' -57.6 NC_003521.1 + 99950 0.72 0.637363
Target:  5'- cGCAgggGGGCGGCGGC---GCCUCGGc- -3'
miRNA:   3'- -CGUa--CUCGUCGCCGagcUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 103646 0.66 0.913848
Target:  5'- aGCggGGGCAGCucGGCggCGGCCgcugCGGc- -3'
miRNA:   3'- -CGuaCUCGUCG--CCGa-GCUGGa---GCCac -5'
14616 3' -57.6 NC_003521.1 + 104696 0.68 0.854446
Target:  5'- cCGUGGGCGGCGucgacgugccCUCGACCgCGGUc -3'
miRNA:   3'- cGUACUCGUCGCc---------GAGCUGGaGCCAc -5'
14616 3' -57.6 NC_003521.1 + 107172 0.67 0.86907
Target:  5'- uGCcgGAGaaggauGUGGCUCcgguuGACCUCGGg- -3'
miRNA:   3'- -CGuaCUCgu----CGCCGAG-----CUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 107336 0.73 0.568799
Target:  5'- ---cGcAGCAGCGGCgccaggugauccUCGACCUCGGg- -3'
miRNA:   3'- cguaC-UCGUCGCCG------------AGCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 113522 0.7 0.75295
Target:  5'- aGCGUGcGCAGCGGCUgGGaucCCUCGc-- -3'
miRNA:   3'- -CGUACuCGUCGCCGAgCU---GGAGCcac -5'
14616 3' -57.6 NC_003521.1 + 113567 0.67 0.895924
Target:  5'- cGCGaggagGAcGCGGUggGGCUgGGCCUCGGg- -3'
miRNA:   3'- -CGUa----CU-CGUCG--CCGAgCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 116007 0.72 0.607866
Target:  5'- cGCAgGAGCAGCGuCUCcaGGCCgCGGUGg -3'
miRNA:   3'- -CGUaCUCGUCGCcGAG--CUGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 118930 0.7 0.747391
Target:  5'- gGCGUGGGCGGCGGCguccCGucagggccagcGCCcgagacagucccuccUCGGUGu -3'
miRNA:   3'- -CGUACUCGUCGCCGa---GC-----------UGG---------------AGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 119593 0.68 0.854446
Target:  5'- cGC-UGGGCGGCGGgugcagcguCUCGugCUgcaGGUGg -3'
miRNA:   3'- -CGuACUCGUCGCC---------GAGCugGAg--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 119826 0.67 0.88952
Target:  5'- ---gGAGCAGCGGCUcCGACUcCGa-- -3'
miRNA:   3'- cguaCUCGUCGCCGA-GCUGGaGCcac -5'
14616 3' -57.6 NC_003521.1 + 120134 0.7 0.73429
Target:  5'- aGCAccGAGguGCGGCUC-ACCUCcacggaGGUGc -3'
miRNA:   3'- -CGUa-CUCguCGCCGAGcUGGAG------CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.