miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 5' -55.9 NC_003521.1 + 54149 0.66 0.953673
Target:  5'- -cCGCCGGcGUUggaGAGGCCGC-CGcCUCc -3'
miRNA:   3'- uaGUGGUC-CAA---CUCCGGCGaGUaGAG- -5'
14616 5' -55.9 NC_003521.1 + 193336 0.66 0.949645
Target:  5'- gGUCGCCuucGUucccaUGucGCCGCUCGUCUUu -3'
miRNA:   3'- -UAGUGGuc-CA-----ACucCGGCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 123354 0.66 0.94539
Target:  5'- cGUCGCCGGGUguggagGAGGCgGCgggggCUg -3'
miRNA:   3'- -UAGUGGUCCAa-----CUCCGgCGagua-GAg -5'
14616 5' -55.9 NC_003521.1 + 225985 0.66 0.940906
Target:  5'- -gCGCCGcacguaguGGUUGGGGUCGUcCAUCUg -3'
miRNA:   3'- uaGUGGU--------CCAACUCCGGCGaGUAGAg -5'
14616 5' -55.9 NC_003521.1 + 151643 0.66 0.936191
Target:  5'- -cCGCCGgcccGGUUc--GCCGCUCGUCUCc -3'
miRNA:   3'- uaGUGGU----CCAAcucCGGCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 34660 0.67 0.926061
Target:  5'- -cCcCCAGGUcgGAGGCCaGCUCGUa-- -3'
miRNA:   3'- uaGuGGUCCAa-CUCCGG-CGAGUAgag -5'
14616 5' -55.9 NC_003521.1 + 57098 0.67 0.923923
Target:  5'- gAUgGCCGGGUaGAGGCCccagcagccggccaGCUCcacgaagcgauagGUCUCg -3'
miRNA:   3'- -UAgUGGUCCAaCUCCGG--------------CGAG-------------UAGAG- -5'
14616 5' -55.9 NC_003521.1 + 97700 0.67 0.920645
Target:  5'- cUCGCCGucGGUgGuGGCCGaCUCGUCg- -3'
miRNA:   3'- uAGUGGU--CCAaCuCCGGC-GAGUAGag -5'
14616 5' -55.9 NC_003521.1 + 235020 0.67 0.920645
Target:  5'- -cCACCccuAGGUcucgGAGGCCGUacUCcUCUCa -3'
miRNA:   3'- uaGUGG---UCCAa---CUCCGGCG--AGuAGAG- -5'
14616 5' -55.9 NC_003521.1 + 211158 0.67 0.914996
Target:  5'- aGUCGCCcauGGUguuuuucgGAGGCgccgCGCUCgGUCUCg -3'
miRNA:   3'- -UAGUGGu--CCAa-------CUCCG----GCGAG-UAGAG- -5'
14616 5' -55.9 NC_003521.1 + 81952 0.67 0.914996
Target:  5'- cGUCACCAugcaGUUaAGGCUGCagGUCUCg -3'
miRNA:   3'- -UAGUGGUc---CAAcUCCGGCGagUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 86331 0.67 0.914996
Target:  5'- cGUCAgCCGGGUggUGAGGCCGUgCAg--- -3'
miRNA:   3'- -UAGU-GGUCCA--ACUCCGGCGaGUagag -5'
14616 5' -55.9 NC_003521.1 + 13719 0.67 0.914996
Target:  5'- -gCGCCAGGgcuGGGaaCCGCUCAguggCUCg -3'
miRNA:   3'- uaGUGGUCCaacUCC--GGCGAGUa---GAG- -5'
14616 5' -55.9 NC_003521.1 + 72040 0.67 0.909114
Target:  5'- -gCACCAGGUccuGGUgcagacccuUGCUCAUCUCc -3'
miRNA:   3'- uaGUGGUCCAacuCCG---------GCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 109811 0.67 0.903002
Target:  5'- uGUCggGCCAGGaUGuAGGCCGCccgCGUCa- -3'
miRNA:   3'- -UAG--UGGUCCaAC-UCCGGCGa--GUAGag -5'
14616 5' -55.9 NC_003521.1 + 84218 0.67 0.896662
Target:  5'- -gCACCAGGcgcgaGAGGCCGCgcugCAccacCUCg -3'
miRNA:   3'- uaGUGGUCCaa---CUCCGGCGa---GUa---GAG- -5'
14616 5' -55.9 NC_003521.1 + 178706 0.68 0.888755
Target:  5'- -gUACCAGGUgaccuucuucacccaUGgcgaGGGCCGCUCAaucagggucuguccgUCUCg -3'
miRNA:   3'- uaGUGGUCCA---------------AC----UCCGGCGAGU---------------AGAG- -5'
14616 5' -55.9 NC_003521.1 + 140486 0.68 0.875589
Target:  5'- uUCGCCGcGGUUGAGGaaggcgcCCGCgUCA-CUCa -3'
miRNA:   3'- uAGUGGU-CCAACUCC-------GGCG-AGUaGAG- -5'
14616 5' -55.9 NC_003521.1 + 220125 0.68 0.861655
Target:  5'- -gCGCCAGGUUGgcGGGCgGUUCgcuGUCUUc -3'
miRNA:   3'- uaGUGGUCCAAC--UCCGgCGAG---UAGAG- -5'
14616 5' -55.9 NC_003521.1 + 178681 0.69 0.821607
Target:  5'- -aCACCGGGUggucGcGGCCGCUCAg--- -3'
miRNA:   3'- uaGUGGUCCAa---CuCCGGCGAGUagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.