miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 5' -55.9 NC_003521.1 + 233380 0.73 0.629987
Target:  5'- cGUCGCCGGGauccgGAGcuGCCGCUgcCGUCUCg -3'
miRNA:   3'- -UAGUGGUCCaa---CUC--CGGCGA--GUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 54149 0.66 0.953673
Target:  5'- -cCGCCGGcGUUggaGAGGCCGC-CGcCUCc -3'
miRNA:   3'- uaGUGGUC-CAA---CUCCGGCGaGUaGAG- -5'
14616 5' -55.9 NC_003521.1 + 193336 0.66 0.949645
Target:  5'- gGUCGCCuucGUucccaUGucGCCGCUCGUCUUu -3'
miRNA:   3'- -UAGUGGuc-CA-----ACucCGGCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 225985 0.66 0.940906
Target:  5'- -gCGCCGcacguaguGGUUGGGGUCGUcCAUCUg -3'
miRNA:   3'- uaGUGGU--------CCAACUCCGGCGaGUAGAg -5'
14616 5' -55.9 NC_003521.1 + 34660 0.67 0.926061
Target:  5'- -cCcCCAGGUcgGAGGCCaGCUCGUa-- -3'
miRNA:   3'- uaGuGGUCCAa-CUCCGG-CGAGUAgag -5'
14616 5' -55.9 NC_003521.1 + 57098 0.67 0.923923
Target:  5'- gAUgGCCGGGUaGAGGCCccagcagccggccaGCUCcacgaagcgauagGUCUCg -3'
miRNA:   3'- -UAgUGGUCCAaCUCCGG--------------CGAG-------------UAGAG- -5'
14616 5' -55.9 NC_003521.1 + 211158 0.67 0.914996
Target:  5'- aGUCGCCcauGGUguuuuucgGAGGCgccgCGCUCgGUCUCg -3'
miRNA:   3'- -UAGUGGu--CCAa-------CUCCG----GCGAG-UAGAG- -5'
14616 5' -55.9 NC_003521.1 + 86331 0.67 0.914996
Target:  5'- cGUCAgCCGGGUggUGAGGCCGUgCAg--- -3'
miRNA:   3'- -UAGU-GGUCCA--ACUCCGGCGaGUagag -5'
14616 5' -55.9 NC_003521.1 + 81952 0.67 0.914996
Target:  5'- cGUCACCAugcaGUUaAGGCUGCagGUCUCg -3'
miRNA:   3'- -UAGUGGUc---CAAcUCCGGCGagUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 72040 0.67 0.909114
Target:  5'- -gCACCAGGUccuGGUgcagacccuUGCUCAUCUCc -3'
miRNA:   3'- uaGUGGUCCAacuCCG---------GCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 109811 0.67 0.903002
Target:  5'- uGUCggGCCAGGaUGuAGGCCGCccgCGUCa- -3'
miRNA:   3'- -UAG--UGGUCCaAC-UCCGGCGa--GUAGag -5'
14616 5' -55.9 NC_003521.1 + 178706 0.68 0.888755
Target:  5'- -gUACCAGGUgaccuucuucacccaUGgcgaGGGCCGCUCAaucagggucuguccgUCUCg -3'
miRNA:   3'- uaGUGGUCCA---------------AC----UCCGGCGAGU---------------AGAG- -5'
14616 5' -55.9 NC_003521.1 + 140486 0.68 0.875589
Target:  5'- uUCGCCGcGGUUGAGGaaggcgcCCGCgUCA-CUCa -3'
miRNA:   3'- uAGUGGU-CCAACUCC-------GGCG-AGUaGAG- -5'
14616 5' -55.9 NC_003521.1 + 178681 0.69 0.821607
Target:  5'- -aCACCGGGUggucGcGGCCGCUCAg--- -3'
miRNA:   3'- uaGUGGUCCAa---CuCCGGCGAGUagag -5'
14616 5' -55.9 NC_003521.1 + 188049 0.72 0.699433
Target:  5'- -gCAgCGGGUUGucgaugccgcgguAGaGCCGCUCGUCUCc -3'
miRNA:   3'- uaGUgGUCCAAC-------------UC-CGGCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 87785 0.72 0.680454
Target:  5'- --gGCCAGGUgcUGAGGCCcguagcGCUCAUCc- -3'
miRNA:   3'- uagUGGUCCA--ACUCCGG------CGAGUAGag -5'
14616 5' -55.9 NC_003521.1 + 222719 1.08 0.004271
Target:  5'- gAUCACCAGGUUGAGGCCGCUCAUCUCg -3'
miRNA:   3'- -UAGUGGUCCAACUCCGGCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 217298 0.79 0.330345
Target:  5'- uGUCACCGuGaUGAGGCUGCUCGUUUCg -3'
miRNA:   3'- -UAGUGGUcCaACUCCGGCGAGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 106905 0.71 0.710333
Target:  5'- -cCACCAGGaUGAGGUCGUucUCGUC-Ca -3'
miRNA:   3'- uaGUGGUCCaACUCCGGCG--AGUAGaG- -5'
14616 5' -55.9 NC_003521.1 + 117411 0.71 0.758714
Target:  5'- -gCACCGGGUgGAGGgCGg-CAUCUCg -3'
miRNA:   3'- uaGUGGUCCAaCUCCgGCgaGUAGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.