miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 5' -55.9 NC_003521.1 + 235020 0.67 0.920645
Target:  5'- -cCACCccuAGGUcucgGAGGCCGUacUCcUCUCa -3'
miRNA:   3'- uaGUGG---UCCAa---CUCCGGCG--AGuAGAG- -5'
14616 5' -55.9 NC_003521.1 + 13719 0.67 0.914996
Target:  5'- -gCGCCAGGgcuGGGaaCCGCUCAguggCUCg -3'
miRNA:   3'- uaGUGGUCCaacUCC--GGCGAGUa---GAG- -5'
14616 5' -55.9 NC_003521.1 + 84218 0.67 0.896662
Target:  5'- -gCACCAGGcgcgaGAGGCCGCgcugCAccacCUCg -3'
miRNA:   3'- uaGUGGUCCaa---CUCCGGCGa---GUa---GAG- -5'
14616 5' -55.9 NC_003521.1 + 220125 0.68 0.861655
Target:  5'- -gCGCCAGGUUGgcGGGCgGUUCgcuGUCUUc -3'
miRNA:   3'- uaGUGGUCCAAC--UCCGgCGAG---UAGAG- -5'
14616 5' -55.9 NC_003521.1 + 117411 0.71 0.758714
Target:  5'- -gCACCGGGUgGAGGgCGg-CAUCUCg -3'
miRNA:   3'- uaGUGGUCCAaCUCCgGCgaGUAGAG- -5'
14616 5' -55.9 NC_003521.1 + 106905 0.71 0.710333
Target:  5'- -cCACCAGGaUGAGGUCGUucUCGUC-Ca -3'
miRNA:   3'- uaGUGGUCCaACUCCGGCG--AGUAGaG- -5'
14616 5' -55.9 NC_003521.1 + 217298 0.79 0.330345
Target:  5'- uGUCACCGuGaUGAGGCUGCUCGUUUCg -3'
miRNA:   3'- -UAGUGGUcCaACUCCGGCGAGUAGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.