Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14616 | 5' | -55.9 | NC_003521.1 | + | 235020 | 0.67 | 0.920645 |
Target: 5'- -cCACCccuAGGUcucgGAGGCCGUacUCcUCUCa -3' miRNA: 3'- uaGUGG---UCCAa---CUCCGGCG--AGuAGAG- -5' |
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14616 | 5' | -55.9 | NC_003521.1 | + | 13719 | 0.67 | 0.914996 |
Target: 5'- -gCGCCAGGgcuGGGaaCCGCUCAguggCUCg -3' miRNA: 3'- uaGUGGUCCaacUCC--GGCGAGUa---GAG- -5' |
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14616 | 5' | -55.9 | NC_003521.1 | + | 84218 | 0.67 | 0.896662 |
Target: 5'- -gCACCAGGcgcgaGAGGCCGCgcugCAccacCUCg -3' miRNA: 3'- uaGUGGUCCaa---CUCCGGCGa---GUa---GAG- -5' |
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14616 | 5' | -55.9 | NC_003521.1 | + | 220125 | 0.68 | 0.861655 |
Target: 5'- -gCGCCAGGUUGgcGGGCgGUUCgcuGUCUUc -3' miRNA: 3'- uaGUGGUCCAAC--UCCGgCGAG---UAGAG- -5' |
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14616 | 5' | -55.9 | NC_003521.1 | + | 117411 | 0.71 | 0.758714 |
Target: 5'- -gCACCGGGUgGAGGgCGg-CAUCUCg -3' miRNA: 3'- uaGUGGUCCAaCUCCgGCgaGUAGAG- -5' |
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14616 | 5' | -55.9 | NC_003521.1 | + | 106905 | 0.71 | 0.710333 |
Target: 5'- -cCACCAGGaUGAGGUCGUucUCGUC-Ca -3' miRNA: 3'- uaGUGGUCCaACUCCGGCG--AGUAGaG- -5' |
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14616 | 5' | -55.9 | NC_003521.1 | + | 217298 | 0.79 | 0.330345 |
Target: 5'- uGUCACCGuGaUGAGGCUGCUCGUUUCg -3' miRNA: 3'- -UAGUGGUcCaACUCCGGCGAGUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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