miRNA display CGI


Results 21 - 40 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 95549 0.66 0.682925
Target:  5'- cGGCGCGCGagcuGGcCGCCgaggCCgaggagGCGCCCu -3'
miRNA:   3'- -UCGUGCGUc---CC-GUGGa---GGa-----CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 73942 0.66 0.653315
Target:  5'- cGCGCGCccgcGGacuugauGUACgaCCUGCGCCCGc -3'
miRNA:   3'- uCGUGCGu---CC-------CGUGgaGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 100998 0.66 0.681974
Target:  5'- cGCuCGCugagggaggacaGGGGCGCgUCCUGgcgggcaCGCCCGu -3'
miRNA:   3'- uCGuGCG------------UCCCGUGgAGGAC-------GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 43377 0.66 0.692411
Target:  5'- gAGCAUGCGcuGGCGCCgCCUG-GCCa- -3'
miRNA:   3'- -UCGUGCGUc-CCGUGGaGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 202552 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 74845 0.67 0.577664
Target:  5'- gAGCGCGacuGGGuGCGCUUCCUcaGCcuGCCCGa -3'
miRNA:   3'- -UCGUGCg--UCC-CGUGGAGGA--CG--CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 39615 0.67 0.596729
Target:  5'- cGGCccaGCGGGaGCagaccgccgGCCUCUcguUGCGCCCAc -3'
miRNA:   3'- -UCGug-CGUCC-CG---------UGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 129020 0.67 0.590997
Target:  5'- uGGCGcCGCcagAGGGCACCcgcagaaacucaaagUCCacgaggGCGCCCu -3'
miRNA:   3'- -UCGU-GCG---UCCCGUGG---------------AGGa-----CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 145427 0.67 0.576714
Target:  5'- gGGCuuGCuGGGCGCCUcgguggaCCUGUGCUUc -3'
miRNA:   3'- -UCGugCGuCCCGUGGA-------GGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 113024 0.67 0.596729
Target:  5'- cGGCACGUgcuGGuGCGCCUCUUucacaaacGCGCCg- -3'
miRNA:   3'- -UCGUGCGu--CC-CGUGGAGGA--------CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 148722 0.67 0.577664
Target:  5'- gGGUuccgACcCGGGGCACCgcCCUGCGCaCCc -3'
miRNA:   3'- -UCG----UGcGUCCCGUGGa-GGACGCG-GGu -5'
14617 5' -63.3 NC_003521.1 + 168939 0.67 0.596729
Target:  5'- cGCAgGCAGGGcCGCCg-CUGuCGCCg- -3'
miRNA:   3'- uCGUgCGUCCC-GUGGagGAC-GCGGgu -5'
14617 5' -63.3 NC_003521.1 + 211135 0.67 0.615884
Target:  5'- gAGgACGCAGcGGaucauCCUCCaGuCGCCCAu -3'
miRNA:   3'- -UCgUGCGUC-CCgu---GGAGGaC-GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 122643 0.67 0.613007
Target:  5'- cAGC-CGCAuGGGCAgCaggUCCUggagcgcgaucgagGCGCCCAg -3'
miRNA:   3'- -UCGuGCGU-CCCGUgG---AGGA--------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 155407 0.67 0.615884
Target:  5'- cGGgGgGCuGGGCACCggaggCCUGCuGCCg- -3'
miRNA:   3'- -UCgUgCGuCCCGUGGa----GGACG-CGGgu -5'
14617 5' -63.3 NC_003521.1 + 130164 0.67 0.606298
Target:  5'- cGCugGCcgaccGGGCcgugACCgugCCgGCGCCCGg -3'
miRNA:   3'- uCGugCGu----CCCG----UGGa--GGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 2324 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 154006 0.67 0.584323
Target:  5'- cAGCACGCAcGGGUcgcgcagcACCUggugcaugcucuugCCgcggcagGCGCCCAu -3'
miRNA:   3'- -UCGUGCGU-CCCG--------UGGA--------------GGa------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 46518 0.67 0.587182
Target:  5'- uGCugGCAcacGGGCGucuUCUCCagGCGCaCCAg -3'
miRNA:   3'- uCGugCGU---CCCGU---GGAGGa-CGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 68156 0.67 0.596729
Target:  5'- --gGCGCAGGuGCugCgUCUGCGCCa- -3'
miRNA:   3'- ucgUGCGUCC-CGugGaGGACGCGGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.