Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14617 | 5' | -63.3 | NC_003521.1 | + | 43377 | 0.66 | 0.692411 |
Target: 5'- gAGCAUGCGcuGGCGCCgCCUG-GCCa- -3' miRNA: 3'- -UCGUGCGUc-CCGUGGaGGACgCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 138837 | 0.66 | 0.682925 |
Target: 5'- uGGaCACGCAGcuGCACCgCCUGCuggacCCCAu -3' miRNA: 3'- -UC-GUGCGUCc-CGUGGaGGACGc----GGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 69292 | 0.66 | 0.68957 |
Target: 5'- cAGCGCGCAGccccgacacagggcGGCGCCgUCCU-CGCuuuCCAa -3' miRNA: 3'- -UCGUGCGUC--------------CCGUGG-AGGAcGCG---GGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 102332 | 0.66 | 0.669584 |
Target: 5'- cGUGCGCGuGGGCGCCgacgCCgggguggcggcagGCGCUCu -3' miRNA: 3'- uCGUGCGU-CCCGUGGa---GGa------------CGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 28753 | 0.66 | 0.663849 |
Target: 5'- cGCGCGCGGGccGCGCCaccgcCCUaGCGCUg- -3' miRNA: 3'- uCGUGCGUCC--CGUGGa----GGA-CGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 121946 | 0.66 | 0.654274 |
Target: 5'- cGuCACGUucuGCACCUCCU-CGCCCGu -3' miRNA: 3'- uC-GUGCGuccCGUGGAGGAcGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 218626 | 0.66 | 0.654274 |
Target: 5'- cAGCGCGCGGcGGUaagcgGCCacggCCggcgGCGCCUc -3' miRNA: 3'- -UCGUGCGUC-CCG-----UGGa---GGa---CGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 100998 | 0.66 | 0.681974 |
Target: 5'- cGCuCGCugagggaggacaGGGGCGCgUCCUGgcgggcaCGCCCGu -3' miRNA: 3'- uCGuGCG------------UCCCGUGgAGGAC-------GCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 129558 | 0.66 | 0.644683 |
Target: 5'- uGGCACgGCGGGcccgacgaugGCugCUCCgccGCGCCg- -3' miRNA: 3'- -UCGUG-CGUCC----------CGugGAGGa--CGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 73942 | 0.66 | 0.653315 |
Target: 5'- cGCGCGCccgcGGacuugauGUACgaCCUGCGCCCGc -3' miRNA: 3'- uCGUGCGu---CC-------CGUGgaGGACGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 154463 | 0.66 | 0.673402 |
Target: 5'- cGCACGCuGuuggucaccGGCACCgCCgGCGCCg- -3' miRNA: 3'- uCGUGCGuC---------CCGUGGaGGaCGCGGgu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 228063 | 0.66 | 0.654274 |
Target: 5'- cGCACGCGcGGGUcccagcucACgUCCgagGCGCCgGa -3' miRNA: 3'- uCGUGCGU-CCCG--------UGgAGGa--CGCGGgU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 141080 | 0.66 | 0.686724 |
Target: 5'- uGCgACGUGGaGGC-CCUCCUGUggcugcucuacugcgGCCCGc -3' miRNA: 3'- uCG-UGCGUC-CCGuGGAGGACG---------------CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 170536 | 0.66 | 0.654274 |
Target: 5'- uGCAcCGCuuucucuucGGCGCCgaCCUGCGCCUg -3' miRNA: 3'- uCGU-GCGuc-------CCGUGGa-GGACGCGGGu -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 138821 | 0.66 | 0.692411 |
Target: 5'- uGGCGCGCcugauGGcGGCGgCUacggCCUGCGgCCAg -3' miRNA: 3'- -UCGUGCG-----UC-CCGUgGA----GGACGCgGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 73218 | 0.66 | 0.692411 |
Target: 5'- gAGCGC-CuGcGGCGCCU-CUGCGCgCCGc -3' miRNA: 3'- -UCGUGcGuC-CCGUGGAgGACGCG-GGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 91182 | 0.66 | 0.663849 |
Target: 5'- cGCAC-CAGGagaGCACCUcgCCggcgGCGUCCAg -3' miRNA: 3'- uCGUGcGUCC---CGUGGA--GGa---CGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 233541 | 0.66 | 0.644683 |
Target: 5'- cGCGuaauCGUAGGGgGCCUagUGCGUCCGu -3' miRNA: 3'- uCGU----GCGUCCCgUGGAggACGCGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 190351 | 0.66 | 0.691465 |
Target: 5'- uGGCACGCGccGGGCAgcaucuccgucuCCUCCgacGUcgauacaGCCCAc -3' miRNA: 3'- -UCGUGCGU--CCCGU------------GGAGGa--CG-------CGGGU- -5' |
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14617 | 5' | -63.3 | NC_003521.1 | + | 112364 | 0.66 | 0.654274 |
Target: 5'- cGCACGCGGcGGCugCggcgUCU-CGUCCAc -3' miRNA: 3'- uCGUGCGUC-CCGugGa---GGAcGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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