miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 222971 1.07 0.00123
Target:  5'- cAGCACGCAGGGCACCUCCUGCGCCCAc -3'
miRNA:   3'- -UCGUGCGUCCCGUGGAGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 152762 0.82 0.078984
Target:  5'- cAGCGCGCGGaacGGCgucGCCUCCUGCGCCUu -3'
miRNA:   3'- -UCGUGCGUC---CCG---UGGAGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 145254 0.76 0.181143
Target:  5'- uGCcUGCAGGGCGCCUCCUcggccucgGCGgCCAg -3'
miRNA:   3'- uCGuGCGUCCCGUGGAGGA--------CGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 23991 0.75 0.20364
Target:  5'- cGC-CGCGGGcuGCgACCUCCUGCGCgCCAu -3'
miRNA:   3'- uCGuGCGUCC--CG-UGGAGGACGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 167604 0.75 0.208421
Target:  5'- cGGCGCGCAGaGGCGCCgcagGCGCUCGg -3'
miRNA:   3'- -UCGUGCGUC-CCGUGGaggaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 14951 0.75 0.208421
Target:  5'- cAGaCGCGCAuGGaGCACCgcaCCUGUGCCCGc -3'
miRNA:   3'- -UC-GUGCGU-CC-CGUGGa--GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 71883 0.75 0.233797
Target:  5'- cGGCGacaGCGGcGGC-CCUgCCUGCGCCCu -3'
miRNA:   3'- -UCGUg--CGUC-CCGuGGA-GGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 95335 0.74 0.244654
Target:  5'- cGCGCGCAGGGCuCCaCCUGCagcgugcgaguGCCCc -3'
miRNA:   3'- uCGUGCGUCCCGuGGaGGACG-----------CGGGu -5'
14617 5' -63.3 NC_003521.1 + 167216 0.73 0.273023
Target:  5'- aGGCGCGCcgcaucuugguguAGGGCGCCaggUCCUcguucaugaccaGCGCCCGc -3'
miRNA:   3'- -UCGUGCG-------------UCCCGUGG---AGGA------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 102017 0.73 0.273628
Target:  5'- aGGCGCGCcauggAGGGCAUCUCCUGgcgguUGCCgCAc -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAGGAC-----GCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 99330 0.73 0.298739
Target:  5'- aGGCGgGCcagguGGGCACCUC--GCGCCCGg -3'
miRNA:   3'- -UCGUgCGu----CCCGUGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 67275 0.73 0.305289
Target:  5'- gGGCGgGCAGGGaggacaGCCgcugcgCCUGaCGCCCGa -3'
miRNA:   3'- -UCGUgCGUCCCg-----UGGa-----GGAC-GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 222652 0.72 0.325598
Target:  5'- aGGCGCGCA--GCGCCUCCacGCuGCCCAg -3'
miRNA:   3'- -UCGUGCGUccCGUGGAGGa-CG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 176456 0.72 0.332587
Target:  5'- cGCcCGCAccucGGGCAUgUCCaggGCGCCCAg -3'
miRNA:   3'- uCGuGCGU----CCCGUGgAGGa--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 217234 0.72 0.332587
Target:  5'- gAGgAUGCAGGccaGCACC-CCcGCGCCCAc -3'
miRNA:   3'- -UCgUGCGUCC---CGUGGaGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 150444 0.72 0.342555
Target:  5'- gAGCGCGCccGGGguCCUCCUggucuggggcggcgaGCGCCUg -3'
miRNA:   3'- -UCGUGCGu-CCCguGGAGGA---------------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 183228 0.72 0.346893
Target:  5'- cGGCACGCugacucGGGGUucGCCgCCgGCGCCCu -3'
miRNA:   3'- -UCGUGCG------UCCCG--UGGaGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 174774 0.72 0.349807
Target:  5'- cGGCAUGguGGGUACCgucuugcccagcauuUCUgucaGCGCCCAc -3'
miRNA:   3'- -UCGUGCguCCCGUGG---------------AGGa---CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 224290 0.72 0.353473
Target:  5'- uGCACGCAGGGUccguugcgcuccaGCCgagCCgaGCGCCgCAg -3'
miRNA:   3'- uCGUGCGUCCCG-------------UGGa--GGa-CGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 120631 0.72 0.35421
Target:  5'- cAGCGgGCAGGGCACC-CacaCGCCCu -3'
miRNA:   3'- -UCGUgCGUCCCGUGGaGgacGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.