miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 1047 0.7 0.416564
Target:  5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3'
miRNA:   3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 2324 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 14229 0.68 0.521455
Target:  5'- cGC-CGCuGGGCuacGCCgugaUCCUGCuGCCCGa -3'
miRNA:   3'- uCGuGCGuCCCG---UGG----AGGACG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 14951 0.75 0.208421
Target:  5'- cAGaCGCGCAuGGaGCACCgcaCCUGUGCCCGc -3'
miRNA:   3'- -UC-GUGCGU-CC-CGUGGa--GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 15125 0.69 0.494141
Target:  5'- cGCACG-AGGGCGCCUgggaGCGCCUg -3'
miRNA:   3'- uCGUGCgUCCCGUGGAgga-CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 17659 0.71 0.392401
Target:  5'- cAGCAC-CGGGGCACCacgguggcCCUGCGuaaCCCGg -3'
miRNA:   3'- -UCGUGcGUCCCGUGGa-------GGACGC---GGGU- -5'
14617 5' -63.3 NC_003521.1 + 18170 0.67 0.587182
Target:  5'- gGGCAgCGUGGaGGCGCUgcgcgCCUGCcgGCCCu -3'
miRNA:   3'- -UCGU-GCGUC-CCGUGGa----GGACG--CGGGu -5'
14617 5' -63.3 NC_003521.1 + 18570 0.68 0.539987
Target:  5'- cGCGCGCAGcuggagagcGCGCUcgacugguUCCUGCGgCCCAg -3'
miRNA:   3'- uCGUGCGUCc--------CGUGG--------AGGACGC-GGGU- -5'
14617 5' -63.3 NC_003521.1 + 20646 0.68 0.539987
Target:  5'- cGCGCGCugguGGGCGCCUacgugaugaCCgugGCGCUg- -3'
miRNA:   3'- uCGUGCGu---CCCGUGGA---------GGa--CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 23991 0.75 0.20364
Target:  5'- cGC-CGCGGGcuGCgACCUCCUGCGCgCCAu -3'
miRNA:   3'- uCGuGCGUCC--CG-UGGAGGACGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 24660 0.71 0.384551
Target:  5'- uGGCGCuGguGGuCACCUUCcugUGCGCCCAg -3'
miRNA:   3'- -UCGUG-CguCCcGUGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 25539 0.67 0.625482
Target:  5'- cGCugGCGGuGGCcuGCCUCUgcaucuCGCCCu -3'
miRNA:   3'- uCGugCGUC-CCG--UGGAGGac----GCGGGu -5'
14617 5' -63.3 NC_003521.1 + 27424 0.67 0.625482
Target:  5'- cGCACGUAGG---CCUCCagGCaGCCCAg -3'
miRNA:   3'- uCGUGCGUCCcguGGAGGa-CG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 28753 0.66 0.663849
Target:  5'- cGCGCGCGGGccGCGCCaccgcCCUaGCGCUg- -3'
miRNA:   3'- uCGUGCGUCC--CGUGGa----GGA-CGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 34676 0.71 0.384551
Target:  5'- cAGCuCGUAGaGGCAguCCUCCUGCGCgUCGu -3'
miRNA:   3'- -UCGuGCGUC-CCGU--GGAGGACGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 37486 0.68 0.539987
Target:  5'- uGC-CGCAGGGCACCcCCauCGCCa- -3'
miRNA:   3'- uCGuGCGUCCCGUGGaGGacGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 39615 0.67 0.596729
Target:  5'- cGGCccaGCGGGaGCagaccgccgGCCUCUcguUGCGCCCAc -3'
miRNA:   3'- -UCGug-CGUCC-CG---------UGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 39809 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 40236 0.68 0.530692
Target:  5'- cAGCGguCGCAGGcGcCGCCUCCgGCaGCUCAc -3'
miRNA:   3'- -UCGU--GCGUCC-C-GUGGAGGaCG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 43377 0.66 0.692411
Target:  5'- gAGCAUGCGcuGGCGCCgCCUG-GCCa- -3'
miRNA:   3'- -UCGUGCGUc-CCGUGGaGGACgCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.