miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 78666 0.7 0.441616
Target:  5'- gGGCuucucgGCGCAGGGgaaGCCgccgUCUGCGCUCAu -3'
miRNA:   3'- -UCG------UGCGUCCCg--UGGa---GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 153496 0.71 0.392401
Target:  5'- uGcCGCGCAGcuGCGCCUCCagGCGCUCGc -3'
miRNA:   3'- uC-GUGCGUCc-CGUGGAGGa-CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 167400 0.71 0.400353
Target:  5'- gGGCACGCuagugGGGGCGCUUCggCUGCuGUCCu -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAG--GACG-CGGGu -5'
14617 5' -63.3 NC_003521.1 + 212654 0.7 0.408409
Target:  5'- gAGCAUGCAGGGUAUCagCaUGC-CCCAg -3'
miRNA:   3'- -UCGUGCGUCCCGUGGagG-ACGcGGGU- -5'
14617 5' -63.3 NC_003521.1 + 201275 0.7 0.416564
Target:  5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3'
miRNA:   3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 101140 0.7 0.423989
Target:  5'- gGGCACGCGGaaagcgcGGCGCggUCUGCGUCCc -3'
miRNA:   3'- -UCGUGCGUC-------CCGUGgaGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 74641 0.7 0.424819
Target:  5'- uGGUGCGCGGGacccuggaGCGCCgcucggcCCUGCGCUCGc -3'
miRNA:   3'- -UCGUGCGUCC--------CGUGGa------GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 130633 0.7 0.424819
Target:  5'- cGCACGcCAGcGGCcuccaccccaACCUCCUGUGCUa- -3'
miRNA:   3'- uCGUGC-GUC-CCG----------UGGAGGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 145173 0.7 0.424819
Target:  5'- cAGuCGCGCAacuccgucuGGCACCUgCUGCGCCUc -3'
miRNA:   3'- -UC-GUGCGUc--------CCGUGGAgGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 50232 0.71 0.384551
Target:  5'- cAGguCGCGGGGC-CaCUCCU-CGCCCu -3'
miRNA:   3'- -UCguGCGUCCCGuG-GAGGAcGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 34676 0.71 0.384551
Target:  5'- cAGCuCGUAGaGGCAguCCUCCUGCGCgUCGu -3'
miRNA:   3'- -UCGuGCGUC-CCGU--GGAGGACGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 120631 0.72 0.35421
Target:  5'- cAGCGgGCAGGGCACC-CacaCGCCCu -3'
miRNA:   3'- -UCGUgCGUCCCGUGGaGgacGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 152762 0.82 0.078984
Target:  5'- cAGCGCGCGGaacGGCgucGCCUCCUGCGCCUu -3'
miRNA:   3'- -UCGUGCGUC---CCG---UGGAGGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 145254 0.76 0.181143
Target:  5'- uGCcUGCAGGGCGCCUCCUcggccucgGCGgCCAg -3'
miRNA:   3'- uCGuGCGUCCCGUGGAGGA--------CGCgGGU- -5'
14617 5' -63.3 NC_003521.1 + 67275 0.73 0.305289
Target:  5'- gGGCGgGCAGGGaggacaGCCgcugcgCCUGaCGCCCGa -3'
miRNA:   3'- -UCGUgCGUCCCg-----UGGa-----GGAC-GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 222652 0.72 0.325598
Target:  5'- aGGCGCGCA--GCGCCUCCacGCuGCCCAg -3'
miRNA:   3'- -UCGUGCGUccCGUGGAGGa-CG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 217234 0.72 0.332587
Target:  5'- gAGgAUGCAGGccaGCACC-CCcGCGCCCAc -3'
miRNA:   3'- -UCgUGCGUCC---CGUGGaGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 150444 0.72 0.342555
Target:  5'- gAGCGCGCccGGGguCCUCCUggucuggggcggcgaGCGCCUg -3'
miRNA:   3'- -UCGUGCGu-CCCguGGAGGA---------------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 224290 0.72 0.353473
Target:  5'- uGCACGCAGGGUccguugcgcuccaGCCgagCCgaGCGCCgCAg -3'
miRNA:   3'- uCGUGCGUCCCG-------------UGGa--GGa-CGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 70094 0.72 0.35421
Target:  5'- uGC-CGCAGGGCACCUggCCgGCGUgCCGc -3'
miRNA:   3'- uCGuGCGUCCCGUGGA--GGaCGCG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.