miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 23991 0.75 0.20364
Target:  5'- cGC-CGCGGGcuGCgACCUCCUGCGCgCCAu -3'
miRNA:   3'- uCGuGCGUCC--CG-UGGAGGACGCG-GGU- -5'
14617 5' -63.3 NC_003521.1 + 66673 0.7 0.441616
Target:  5'- uGCAUGCGGGucuuugcucaGUACCUCCUGgGCUg- -3'
miRNA:   3'- uCGUGCGUCC----------CGUGGAGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 39809 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 43377 0.66 0.692411
Target:  5'- gAGCAUGCGcuGGCGCCgCCUG-GCCa- -3'
miRNA:   3'- -UCGUGCGUc-CCGUGGaGGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 95335 0.74 0.244654
Target:  5'- cGCGCGCAGGGCuCCaCCUGCagcgugcgaguGCCCc -3'
miRNA:   3'- uCGUGCGUCCCGuGGaGGACG-----------CGGGu -5'
14617 5' -63.3 NC_003521.1 + 167216 0.73 0.273023
Target:  5'- aGGCGCGCcgcaucuugguguAGGGCGCCaggUCCUcguucaugaccaGCGCCCGc -3'
miRNA:   3'- -UCGUGCG-------------UCCCGUGG---AGGA------------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 99330 0.73 0.298739
Target:  5'- aGGCGgGCcagguGGGCACCUC--GCGCCCGg -3'
miRNA:   3'- -UCGUgCGu----CCCGUGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 176456 0.72 0.332587
Target:  5'- cGCcCGCAccucGGGCAUgUCCaggGCGCCCAg -3'
miRNA:   3'- uCGuGCGU----CCCGUGgAGGa--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 24660 0.71 0.384551
Target:  5'- uGGCGCuGguGGuCACCUUCcugUGCGCCCAg -3'
miRNA:   3'- -UCGUG-CguCCcGUGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 205838 0.7 0.43317
Target:  5'- cGCugGCcccGGagACCUUCUGCGCCCGc -3'
miRNA:   3'- uCGugCGuc-CCg-UGGAGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 1047 0.7 0.416564
Target:  5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3'
miRNA:   3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5'
14617 5' -63.3 NC_003521.1 + 174774 0.72 0.349807
Target:  5'- cGGCAUGguGGGUACCgucuugcccagcauuUCUgucaGCGCCCAc -3'
miRNA:   3'- -UCGUGCguCCCGUGG---------------AGGa---CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 14951 0.75 0.208421
Target:  5'- cAGaCGCGCAuGGaGCACCgcaCCUGUGCCCGc -3'
miRNA:   3'- -UC-GUGCGU-CC-CGUGGa--GGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 106717 0.7 0.416564
Target:  5'- aGGCGCGCAGgacggccaccaGGUccuggauggacACCUCCgcguccaggGCGCCCAg -3'
miRNA:   3'- -UCGUGCGUC-----------CCG-----------UGGAGGa--------CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 167604 0.75 0.208421
Target:  5'- cGGCGCGCAGaGGCGCCgcagGCGCUCGg -3'
miRNA:   3'- -UCGUGCGUC-CCGUGGaggaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 183228 0.72 0.346893
Target:  5'- cGGCACGCugacucGGGGUucGCCgCCgGCGCCCu -3'
miRNA:   3'- -UCGUGCG------UCCCG--UGGaGGaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 162884 0.7 0.43317
Target:  5'- cGCGCGCAGGuGgGCCgcuacugCCUGCaggacGCCCu -3'
miRNA:   3'- uCGUGCGUCC-CgUGGa------GGACG-----CGGGu -5'
14617 5' -63.3 NC_003521.1 + 167148 0.7 0.441616
Target:  5'- gAGCAgCGCcuuGGGCGCCUCggGCGUCUu -3'
miRNA:   3'- -UCGU-GCGu--CCCGUGGAGgaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 71883 0.75 0.233797
Target:  5'- cGGCGacaGCGGcGGC-CCUgCCUGCGCCCu -3'
miRNA:   3'- -UCGUg--CGUC-CCGuGGA-GGACGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 102017 0.73 0.273628
Target:  5'- aGGCGCGCcauggAGGGCAUCUCCUGgcgguUGCCgCAc -3'
miRNA:   3'- -UCGUGCG-----UCCCGUGGAGGAC-----GCGG-GU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.