miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 5' -54.5 NC_003521.1 + 186764 0.68 0.935407
Target:  5'- uCGGcgGCaucggCGGAGG-CGGCGGugGUGg -3'
miRNA:   3'- -GUCuaUGa----GCCUCCgGUCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 123659 0.69 0.914244
Target:  5'- gCGGGUuagGCUUGGAGggaGCCGGCGcgcugcGGCGUGg -3'
miRNA:   3'- -GUCUA---UGAGCCUC---CGGUCGC------UUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 95087 0.66 0.975256
Target:  5'- gCAGggGCUCGGGcgccuugagcGGCCGcGCgcgcuuGAGCGUGg -3'
miRNA:   3'- -GUCuaUGAGCCU----------CCGGU-CG------CUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 17228 0.68 0.944611
Target:  5'- gAGGU-CUCGGAGGCCgaGGUGGAgGc- -3'
miRNA:   3'- gUCUAuGAGCCUCCGG--UCGCUUgCac -5'
14618 5' -54.5 NC_003521.1 + 152070 0.69 0.90838
Target:  5'- uGGAcuuCUCGGAGGaccaCGGCG-ACGUGc -3'
miRNA:   3'- gUCUau-GAGCCUCCg---GUCGCuUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 128944 0.67 0.969882
Target:  5'- aAGGUACguccgaaCGaGGGGCUGGCG-GCGUGg -3'
miRNA:   3'- gUCUAUGa------GC-CUCCGGUCGCuUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 103468 0.69 0.902289
Target:  5'- gCGGAUGCg-GGAGGgcggcuCCAGCGGgcccGCGUGa -3'
miRNA:   3'- -GUCUAUGagCCUCC------GGUCGCU----UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 240624 0.69 0.902289
Target:  5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3'
miRNA:   3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 173433 0.68 0.952912
Target:  5'- uGGAUGCccguggUCagGGAGGCCAGCGAcaucugcaACGg- -3'
miRNA:   3'- gUCUAUG------AG--CCUCCGGUCGCU--------UGCac -5'
14618 5' -54.5 NC_003521.1 + 113841 0.66 0.981955
Target:  5'- gCAGcgGCagCGGGgcGGCCGGCGAcgACGg- -3'
miRNA:   3'- -GUCuaUGa-GCCU--CCGGUCGCU--UGCac -5'
14618 5' -54.5 NC_003521.1 + 38297 0.68 0.930461
Target:  5'- gCAGGUgcgagaGCUCGucGGCCAGCGggUagagGUGg -3'
miRNA:   3'- -GUCUA------UGAGCcuCCGGUCGCuuG----CAC- -5'
14618 5' -54.5 NC_003521.1 + 125453 0.69 0.914244
Target:  5'- gCAcAUGC-CGGcccuGGCCAGCGAcGCGUGa -3'
miRNA:   3'- -GUcUAUGaGCCu---CCGGUCGCU-UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 174372 0.67 0.960332
Target:  5'- gUAGAUACUCGGAcaCCAGC--GCGUc -3'
miRNA:   3'- -GUCUAUGAGCCUccGGUCGcuUGCAc -5'
14618 5' -54.5 NC_003521.1 + 111586 0.66 0.975256
Target:  5'- cCAGGUGCcgCGcGuGGCCAGCG-GCGc- -3'
miRNA:   3'- -GUCUAUGa-GC-CuCCGGUCGCuUGCac -5'
14618 5' -54.5 NC_003521.1 + 150532 0.68 0.952912
Target:  5'- gCGGGaGC-CGuGGGGuCCGGCGGugGUGg -3'
miRNA:   3'- -GUCUaUGaGC-CUCC-GGUCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 202024 0.68 0.944611
Target:  5'- cCAGGU-C-CGGGGGuCCGGCGAAUGc- -3'
miRNA:   3'- -GUCUAuGaGCCUCC-GGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 179483 0.66 0.981955
Target:  5'- aCGGGUACgcucCGGcAGcGCCGGgGAacACGUGu -3'
miRNA:   3'- -GUCUAUGa---GCC-UC-CGGUCgCU--UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 121379 0.69 0.902289
Target:  5'- cCAGGcuCUUGGGGGCCA-UGAugGUGa -3'
miRNA:   3'- -GUCUauGAGCCUCCGGUcGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 24427 0.66 0.979895
Target:  5'- cCAGAcgGCgCaGGGGCCGGCGGGCu-- -3'
miRNA:   3'- -GUCUa-UGaGcCUCCGGUCGCUUGcac -5'
14618 5' -54.5 NC_003521.1 + 32515 0.66 0.979895
Target:  5'- cCAGGUACUCGuAGG-UGGUGAGCGg- -3'
miRNA:   3'- -GUCUAUGAGCcUCCgGUCGCUUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.