miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 5' -54.5 NC_003521.1 + 77022 0.74 0.691292
Target:  5'- gCAGcAUGCgguuGAGGCCGGCGGugGUGg -3'
miRNA:   3'- -GUC-UAUGagc-CUCCGGUCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 77701 0.69 0.919879
Target:  5'- aCAGAUGCccgaGGAGG-CGGCGGugGUc -3'
miRNA:   3'- -GUCUAUGag--CCUCCgGUCGCUugCAc -5'
14618 5' -54.5 NC_003521.1 + 79029 0.66 0.972665
Target:  5'- gAGGU-CUUGGuGGCCGGCGugacagacauGGCGUa -3'
miRNA:   3'- gUCUAuGAGCCuCCGGUCGC----------UUGCAc -5'
14618 5' -54.5 NC_003521.1 + 81925 0.7 0.889436
Target:  5'- gGGGUACUUGGA-GCgGGCGGugGUc -3'
miRNA:   3'- gUCUAUGAGCCUcCGgUCGCUugCAc -5'
14618 5' -54.5 NC_003521.1 + 83964 0.72 0.77747
Target:  5'- gAGGUGCUCGG-GGUCGGUGAcccGCGa- -3'
miRNA:   3'- gUCUAUGAGCCuCCGGUCGCU---UGCac -5'
14618 5' -54.5 NC_003521.1 + 92475 0.66 0.983853
Target:  5'- ----cGCUCGGGGGucucCCAGCcucuccGGGCGUGg -3'
miRNA:   3'- gucuaUGAGCCUCC----GGUCG------CUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 95087 0.66 0.975256
Target:  5'- gCAGggGCUCGGGcgccuugagcGGCCGcGCgcgcuuGAGCGUGg -3'
miRNA:   3'- -GUCuaUGAGCCU----------CCGGU-CG------CUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 100379 0.66 0.981955
Target:  5'- aCGGggACggcaCGGAGGCCGGgGAgaagACGg- -3'
miRNA:   3'- -GUCuaUGa---GCCUCCGGUCgCU----UGCac -5'
14618 5' -54.5 NC_003521.1 + 103468 0.69 0.902289
Target:  5'- gCGGAUGCg-GGAGGgcggcuCCAGCGGgcccGCGUGa -3'
miRNA:   3'- -GUCUAUGagCCUCC------GGUCGCU----UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 105658 0.67 0.969882
Target:  5'- ----aGCUCGGGGGUgGGCGGcACGa- -3'
miRNA:   3'- gucuaUGAGCCUCCGgUCGCU-UGCac -5'
14618 5' -54.5 NC_003521.1 + 105890 0.67 0.963721
Target:  5'- gCAGAUGC-CGGGGGCguGU--ACGUa -3'
miRNA:   3'- -GUCUAUGaGCCUCCGguCGcuUGCAc -5'
14618 5' -54.5 NC_003521.1 + 111586 0.66 0.975256
Target:  5'- cCAGGUGCcgCGcGuGGCCAGCG-GCGc- -3'
miRNA:   3'- -GUCUAUGa-GC-CuCCGGUCGCuUGCac -5'
14618 5' -54.5 NC_003521.1 + 113841 0.66 0.981955
Target:  5'- gCAGcgGCagCGGGgcGGCCGGCGAcgACGg- -3'
miRNA:   3'- -GUCuaUGa-GCCU--CCGGUCGCU--UGCac -5'
14618 5' -54.5 NC_003521.1 + 115751 0.66 0.979679
Target:  5'- cCAGGUcCUCGGggaagggaucagaAGGCCGGUGuGACGg- -3'
miRNA:   3'- -GUCUAuGAGCC-------------UCCGGUCGC-UUGCac -5'
14618 5' -54.5 NC_003521.1 + 116682 0.66 0.983853
Target:  5'- gCAGcgGCggCGGAGGCagcggcGCGGGCGg- -3'
miRNA:   3'- -GUCuaUGa-GCCUCCGgu----CGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 121379 0.69 0.902289
Target:  5'- cCAGGcuCUUGGGGGCCA-UGAugGUGa -3'
miRNA:   3'- -GUCUauGAGCCUCCGGUcGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 123659 0.69 0.914244
Target:  5'- gCGGGUuagGCUUGGAGggaGCCGGCGcgcugcGGCGUGg -3'
miRNA:   3'- -GUCUA---UGAGCCUC---CGGUCGC------UUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 125453 0.69 0.914244
Target:  5'- gCAcAUGC-CGGcccuGGCCAGCGAcGCGUGa -3'
miRNA:   3'- -GUcUAUGaGCCu---CCGGUCGCU-UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 128944 0.67 0.969882
Target:  5'- aAGGUACguccgaaCGaGGGGCUGGCG-GCGUGg -3'
miRNA:   3'- gUCUAUGa------GC-CUCCGGUCGCuUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 133735 0.69 0.90838
Target:  5'- gAGAUGCUCGGuaugcuGGCCGGCaGGcccgGCGa- -3'
miRNA:   3'- gUCUAUGAGCCu-----CCGGUCG-CU----UGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.