miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 5' -54.5 NC_003521.1 + 75 0.69 0.902289
Target:  5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3'
miRNA:   3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 1797 0.68 0.944611
Target:  5'- cCAGGU-C-CGGGGGuCCGGCGAAUGc- -3'
miRNA:   3'- -GUCUAuGaGCCUCC-GGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 5397 0.7 0.880613
Target:  5'- aCGGGuUGCUCGGGGGCCucgcccgaggacgaGGCGGAgGa- -3'
miRNA:   3'- -GUCU-AUGAGCCUCCGG--------------UCGCUUgCac -5'
14618 5' -54.5 NC_003521.1 + 6613 0.68 0.935407
Target:  5'- aCGGAaccgucUUCGGAGGCCGcgcGCGAACGc- -3'
miRNA:   3'- -GUCUau----GAGCCUCCGGU---CGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 10481 0.66 0.975256
Target:  5'- gGGAUAa-CGGAGcaugcGCCGGCGGggaugGCGUGg -3'
miRNA:   3'- gUCUAUgaGCCUC-----CGGUCGCU-----UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 17228 0.68 0.944611
Target:  5'- gAGGU-CUCGGAGGCCgaGGUGGAgGc- -3'
miRNA:   3'- gUCUAuGAGCCUCCGG--UCGCUUgCac -5'
14618 5' -54.5 NC_003521.1 + 18372 0.66 0.981955
Target:  5'- aAGAUcgaggACUCGGAccuguaccGGCUGGCGGACa-- -3'
miRNA:   3'- gUCUA-----UGAGCCU--------CCGGUCGCUUGcac -5'
14618 5' -54.5 NC_003521.1 + 20627 0.71 0.821374
Target:  5'- cCAGAUguGCUCGGAGaGCCgcgcgcuggugGGCGccuACGUGa -3'
miRNA:   3'- -GUCUA--UGAGCCUC-CGG-----------UCGCu--UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 24427 0.66 0.979895
Target:  5'- cCAGAcgGCgCaGGGGCCGGCGGGCu-- -3'
miRNA:   3'- -GUCUa-UGaGcCUCCGGUCGCUUGcac -5'
14618 5' -54.5 NC_003521.1 + 32515 0.66 0.979895
Target:  5'- cCAGGUACUCGuAGG-UGGUGAGCGg- -3'
miRNA:   3'- -GUCUAUGAGCcUCCgGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 33486 0.74 0.691292
Target:  5'- cCAGAU-CUCGGGcGCCAcGCGAGCGUc -3'
miRNA:   3'- -GUCUAuGAGCCUcCGGU-CGCUUGCAc -5'
14618 5' -54.5 NC_003521.1 + 34663 0.67 0.956731
Target:  5'- cCAGG---UCGGAGGCCAGCu--CGUa -3'
miRNA:   3'- -GUCUaugAGCCUCCGGUCGcuuGCAc -5'
14618 5' -54.5 NC_003521.1 + 34991 0.75 0.651381
Target:  5'- aAGGU-CUCcGGGGCCAGCGAGCGc- -3'
miRNA:   3'- gUCUAuGAGcCUCCGGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 38297 0.68 0.930461
Target:  5'- gCAGGUgcgagaGCUCGucGGCCAGCGggUagagGUGg -3'
miRNA:   3'- -GUCUA------UGAGCcuCCGGUCGCuuG----CAC- -5'
14618 5' -54.5 NC_003521.1 + 51558 0.66 0.983853
Target:  5'- -uGGUgGCUCGGAGGCgAGaCGAGUGUc -3'
miRNA:   3'- guCUA-UGAGCCUCCGgUC-GCUUGCAc -5'
14618 5' -54.5 NC_003521.1 + 54485 0.66 0.972665
Target:  5'- aGGAUgaACUUGauGGCCGGCGGcccgGCGUGg -3'
miRNA:   3'- gUCUA--UGAGCcuCCGGUCGCU----UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 56274 0.66 0.979895
Target:  5'- gCAGAgguuggACUCGcAGGCCAGCaucgaguacuuGAccACGUGa -3'
miRNA:   3'- -GUCUa-----UGAGCcUCCGGUCG-----------CU--UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 57216 0.68 0.944611
Target:  5'- ----aACUCGGAGGCguagcucagaGGCGAGCGg- -3'
miRNA:   3'- gucuaUGAGCCUCCGg---------UCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 66354 0.66 0.975256
Target:  5'- uGGAUcccGCUCGcGuGGCCGGCG-GCGa- -3'
miRNA:   3'- gUCUA---UGAGC-CuCCGGUCGCuUGCac -5'
14618 5' -54.5 NC_003521.1 + 75331 0.66 0.979895
Target:  5'- cCAGAUGCUgaCGGcGGCCcGCGA-CGa- -3'
miRNA:   3'- -GUCUAUGA--GCCuCCGGuCGCUuGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.