miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 5' -54.5 NC_003521.1 + 79029 0.66 0.972665
Target:  5'- gAGGU-CUUGGuGGCCGGCGugacagacauGGCGUa -3'
miRNA:   3'- gUCUAuGAGCCuCCGGUCGC----------UUGCAc -5'
14618 5' -54.5 NC_003521.1 + 153444 0.66 0.983853
Target:  5'- -cGGUcgcGCUCGuAGGCCAGCGGcucgcaggccACGUa -3'
miRNA:   3'- guCUA---UGAGCcUCCGGUCGCU----------UGCAc -5'
14618 5' -54.5 NC_003521.1 + 147855 0.66 0.983853
Target:  5'- uCGGGguUGCUgGGGGGCC--CGAugGUGc -3'
miRNA:   3'- -GUCU--AUGAgCCUCCGGucGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 95087 0.66 0.975256
Target:  5'- gCAGggGCUCGGGcgccuugagcGGCCGcGCgcgcuuGAGCGUGg -3'
miRNA:   3'- -GUCuaUGAGCCU----------CCGGU-CG------CUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 111586 0.66 0.975256
Target:  5'- cCAGGUGCcgCGcGuGGCCAGCG-GCGc- -3'
miRNA:   3'- -GUCUAUGa-GC-CuCCGGUCGCuUGCac -5'
14618 5' -54.5 NC_003521.1 + 18372 0.66 0.981955
Target:  5'- aAGAUcgaggACUCGGAccuguaccGGCUGGCGGACa-- -3'
miRNA:   3'- gUCUA-----UGAGCCU--------CCGGUCGCUUGcac -5'
14618 5' -54.5 NC_003521.1 + 100379 0.66 0.981955
Target:  5'- aCGGggACggcaCGGAGGCCGGgGAgaagACGg- -3'
miRNA:   3'- -GUCuaUGa---GCCUCCGGUCgCU----UGCac -5'
14618 5' -54.5 NC_003521.1 + 113841 0.66 0.981955
Target:  5'- gCAGcgGCagCGGGgcGGCCGGCGAcgACGg- -3'
miRNA:   3'- -GUCuaUGa-GCCU--CCGGUCGCU--UGCac -5'
14618 5' -54.5 NC_003521.1 + 116682 0.66 0.983853
Target:  5'- gCAGcgGCggCGGAGGCagcggcGCGGGCGg- -3'
miRNA:   3'- -GUCuaUGa-GCCUCCGgu----CGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 92475 0.66 0.983853
Target:  5'- ----cGCUCGGGGGucucCCAGCcucuccGGGCGUGg -3'
miRNA:   3'- gucuaUGAGCCUCC----GGUCG------CUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 51558 0.66 0.983853
Target:  5'- -uGGUgGCUCGGAGGCgAGaCGAGUGUc -3'
miRNA:   3'- guCUA-UGAGCCUCCGgUC-GCUUGCAc -5'
14618 5' -54.5 NC_003521.1 + 10481 0.66 0.975256
Target:  5'- gGGAUAa-CGGAGcaugcGCCGGCGGggaugGCGUGg -3'
miRNA:   3'- gUCUAUgaGCCUC-----CGGUCGCU-----UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 66354 0.66 0.975256
Target:  5'- uGGAUcccGCUCGcGuGGCCGGCG-GCGa- -3'
miRNA:   3'- gUCUA---UGAGC-CuCCGGUCGCuUGCac -5'
14618 5' -54.5 NC_003521.1 + 115751 0.66 0.979679
Target:  5'- cCAGGUcCUCGGggaagggaucagaAGGCCGGUGuGACGg- -3'
miRNA:   3'- -GUCUAuGAGCC-------------UCCGGUCGC-UUGCac -5'
14618 5' -54.5 NC_003521.1 + 56274 0.66 0.979895
Target:  5'- gCAGAgguuggACUCGcAGGCCAGCaucgaguacuuGAccACGUGa -3'
miRNA:   3'- -GUCUa-----UGAGCcUCCGGUCG-----------CU--UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 32515 0.66 0.979895
Target:  5'- cCAGGUACUCGuAGG-UGGUGAGCGg- -3'
miRNA:   3'- -GUCUAUGAGCcUCCgGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 179483 0.66 0.981955
Target:  5'- aCGGGUACgcucCGGcAGcGCCGGgGAacACGUGu -3'
miRNA:   3'- -GUCUAUGa---GCC-UC-CGGUCgCU--UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 75331 0.66 0.979895
Target:  5'- cCAGAUGCUgaCGGcGGCCcGCGA-CGa- -3'
miRNA:   3'- -GUCUAUGA--GCCuCCGGuCGCUuGCac -5'
14618 5' -54.5 NC_003521.1 + 24427 0.66 0.979895
Target:  5'- cCAGAcgGCgCaGGGGCCGGCGGGCu-- -3'
miRNA:   3'- -GUCUa-UGaGcCUCCGGUCGCUUGcac -5'
14618 5' -54.5 NC_003521.1 + 54485 0.66 0.972665
Target:  5'- aGGAUgaACUUGauGGCCGGCGGcccgGCGUGg -3'
miRNA:   3'- gUCUA--UGAGCcuCCGGUCGCU----UGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.