miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 5' -54.5 NC_003521.1 + 54485 0.66 0.972665
Target:  5'- aGGAUgaACUUGauGGCCGGCGGcccgGCGUGg -3'
miRNA:   3'- gUCUA--UGAGCcuCCGGUCGCU----UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 170163 0.68 0.944611
Target:  5'- aAGAuaUACUCGGuGGUCgacuucggAGCGGugGUGc -3'
miRNA:   3'- gUCU--AUGAGCCuCCGG--------UCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 202024 0.68 0.944611
Target:  5'- cCAGGU-C-CGGGGGuCCGGCGAAUGc- -3'
miRNA:   3'- -GUCUAuGaGCCUCC-GGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 150532 0.68 0.952912
Target:  5'- gCGGGaGC-CGuGGGGuCCGGCGGugGUGg -3'
miRNA:   3'- -GUCUaUGaGC-CUCC-GGUCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 34663 0.67 0.956731
Target:  5'- cCAGG---UCGGAGGCCAGCu--CGUa -3'
miRNA:   3'- -GUCUaugAGCCUCCGGUCGcuuGCAc -5'
14618 5' -54.5 NC_003521.1 + 212012 0.67 0.960332
Target:  5'- uGGGUACUCGG-GGCCGuGUGccaaGUGg -3'
miRNA:   3'- gUCUAUGAGCCuCCGGU-CGCuug-CAC- -5'
14618 5' -54.5 NC_003521.1 + 105890 0.67 0.963721
Target:  5'- gCAGAUGC-CGGGGGCguGU--ACGUa -3'
miRNA:   3'- -GUCUAUGaGCCUCCGguCGcuUGCAc -5'
14618 5' -54.5 NC_003521.1 + 218608 0.67 0.963721
Target:  5'- gAGGUACgguUCGGccGCCAGCGcGCGg- -3'
miRNA:   3'- gUCUAUG---AGCCucCGGUCGCuUGCac -5'
14618 5' -54.5 NC_003521.1 + 105658 0.67 0.969882
Target:  5'- ----aGCUCGGGGGUgGGCGGcACGa- -3'
miRNA:   3'- gucuaUGAGCCUCCGgUCGCU-UGCac -5'
14618 5' -54.5 NC_003521.1 + 57216 0.68 0.944611
Target:  5'- ----aACUCGGAGGCguagcucagaGGCGAGCGg- -3'
miRNA:   3'- gucuaUGAGCCUCCGg---------UCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 218403 0.68 0.938732
Target:  5'- -cGGUACUCGGccacgccgcgcagcAuGGCCAGCGAcaGCGg- -3'
miRNA:   3'- guCUAUGAGCC--------------U-CCGGUCGCU--UGCac -5'
14618 5' -54.5 NC_003521.1 + 238524 0.68 0.930461
Target:  5'- gCAGGUgcgagaGCUCGucGGCCAGCGggUagagGUGg -3'
miRNA:   3'- -GUCUA------UGAGCcuCCGGUCGCuuG----CAC- -5'
14618 5' -54.5 NC_003521.1 + 34991 0.75 0.651381
Target:  5'- aAGGU-CUCcGGGGCCAGCGAGCGc- -3'
miRNA:   3'- gUCUAuGAGcCUCCGGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 33486 0.74 0.691292
Target:  5'- cCAGAU-CUCGGGcGCCAcGCGAGCGUc -3'
miRNA:   3'- -GUCUAuGAGCCUcCGGU-CGCUUGCAc -5'
14618 5' -54.5 NC_003521.1 + 166847 0.71 0.853568
Target:  5'- aGGAUACgcaggCGGuGGCgCGGCGGGCGc- -3'
miRNA:   3'- gUCUAUGa----GCCuCCG-GUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 81925 0.7 0.889436
Target:  5'- gGGGUACUUGGA-GCgGGCGGugGUc -3'
miRNA:   3'- gUCUAUGAGCCUcCGgUCGCUugCAc -5'
14618 5' -54.5 NC_003521.1 + 200303 0.69 0.902289
Target:  5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3'
miRNA:   3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 121379 0.69 0.902289
Target:  5'- cCAGGcuCUUGGGGGCCA-UGAugGUGa -3'
miRNA:   3'- -GUCUauGAGCCUCCGGUcGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 133735 0.69 0.90838
Target:  5'- gAGAUGCUCGGuaugcuGGCCGGCaGGcccgGCGa- -3'
miRNA:   3'- gUCUAUGAGCCu-----CCGGUCG-CU----UGCac -5'
14618 5' -54.5 NC_003521.1 + 163476 0.69 0.919879
Target:  5'- aGGAUGaugagacCGGGGGCgaaAGCGAAUGUGg -3'
miRNA:   3'- gUCUAUga-----GCCUCCGg--UCGCUUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.