miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 5' -54.5 NC_003521.1 + 223075 1.08 0.00771
Target:  5'- aCAGAUACUCGGAGGCCAGCGAACGUGc -3'
miRNA:   3'- -GUCUAUGAGCCUCCGGUCGCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 188513 0.76 0.571317
Target:  5'- gAGAUACgaGGAGGCCGGCGGGCc-- -3'
miRNA:   3'- gUCUAUGagCCUCCGGUCGCUUGcac -5'
14618 5' -54.5 NC_003521.1 + 34991 0.75 0.651381
Target:  5'- aAGGU-CUCcGGGGCCAGCGAGCGc- -3'
miRNA:   3'- gUCUAuGAGcCUCCGGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 33486 0.74 0.691292
Target:  5'- cCAGAU-CUCGGGcGCCAcGCGAGCGUc -3'
miRNA:   3'- -GUCUAuGAGCCUcCGGU-CGCUUGCAc -5'
14618 5' -54.5 NC_003521.1 + 77022 0.74 0.691292
Target:  5'- gCAGcAUGCgguuGAGGCCGGCGGugGUGg -3'
miRNA:   3'- -GUC-UAUGagc-CUCCGGUCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 83964 0.72 0.77747
Target:  5'- gAGGUGCUCGG-GGUCGGUGAcccGCGa- -3'
miRNA:   3'- gUCUAUGAGCCuCCGGUCGCU---UGCac -5'
14618 5' -54.5 NC_003521.1 + 212414 0.72 0.803382
Target:  5'- cCAGGUugUCGGAGGCguugaucUGGCGAcacuCGUGc -3'
miRNA:   3'- -GUCUAugAGCCUCCG-------GUCGCUu---GCAC- -5'
14618 5' -54.5 NC_003521.1 + 20627 0.71 0.821374
Target:  5'- cCAGAUguGCUCGGAGaGCCgcgcgcuggugGGCGccuACGUGa -3'
miRNA:   3'- -GUCUA--UGAGCCUC-CGG-----------UCGCu--UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 164954 0.71 0.829689
Target:  5'- uCAGGUGCUCa-AGGCCGuGaCGAACGUGc -3'
miRNA:   3'- -GUCUAUGAGccUCCGGU-C-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 166847 0.71 0.853568
Target:  5'- aGGAUACgcaggCGGuGGCgCGGCGGGCGc- -3'
miRNA:   3'- gUCUAUGa----GCCuCCG-GUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 5397 0.7 0.880613
Target:  5'- aCGGGuUGCUCGGGGGCCucgcccgaggacgaGGCGGAgGa- -3'
miRNA:   3'- -GUCU-AUGAGCCUCCGG--------------UCGCUUgCac -5'
14618 5' -54.5 NC_003521.1 + 81925 0.7 0.889436
Target:  5'- gGGGUACUUGGA-GCgGGCGGugGUc -3'
miRNA:   3'- gUCUAUGAGCCUcCGgUCGCUugCAc -5'
14618 5' -54.5 NC_003521.1 + 103468 0.69 0.902289
Target:  5'- gCGGAUGCg-GGAGGgcggcuCCAGCGGgcccGCGUGa -3'
miRNA:   3'- -GUCUAUGagCCUCC------GGUCGCU----UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 240624 0.69 0.902289
Target:  5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3'
miRNA:   3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 75 0.69 0.902289
Target:  5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3'
miRNA:   3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 121379 0.69 0.902289
Target:  5'- cCAGGcuCUUGGGGGCCA-UGAugGUGa -3'
miRNA:   3'- -GUCUauGAGCCUCCGGUcGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 200303 0.69 0.902289
Target:  5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3'
miRNA:   3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 133735 0.69 0.90838
Target:  5'- gAGAUGCUCGGuaugcuGGCCGGCaGGcccgGCGa- -3'
miRNA:   3'- gUCUAUGAGCCu-----CCGGUCG-CU----UGCac -5'
14618 5' -54.5 NC_003521.1 + 152070 0.69 0.90838
Target:  5'- uGGAcuuCUCGGAGGaccaCGGCG-ACGUGc -3'
miRNA:   3'- gUCUau-GAGCCUCCg---GUCGCuUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 123659 0.69 0.914244
Target:  5'- gCGGGUuagGCUUGGAGggaGCCGGCGcgcugcGGCGUGg -3'
miRNA:   3'- -GUCUA---UGAGCCUC---CGGUCGC------UUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.