miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 5' -54.5 NC_003521.1 + 240624 0.69 0.902289
Target:  5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3'
miRNA:   3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 238524 0.68 0.930461
Target:  5'- gCAGGUgcgagaGCUCGucGGCCAGCGggUagagGUGg -3'
miRNA:   3'- -GUCUA------UGAGCcuCCGGUCGCuuG----CAC- -5'
14618 5' -54.5 NC_003521.1 + 223075 1.08 0.00771
Target:  5'- aCAGAUACUCGGAGGCCAGCGAACGUGc -3'
miRNA:   3'- -GUCUAUGAGCCUCCGGUCGCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 218608 0.67 0.963721
Target:  5'- gAGGUACgguUCGGccGCCAGCGcGCGg- -3'
miRNA:   3'- gUCUAUG---AGCCucCGGUCGCuUGCac -5'
14618 5' -54.5 NC_003521.1 + 218403 0.68 0.938732
Target:  5'- -cGGUACUCGGccacgccgcgcagcAuGGCCAGCGAcaGCGg- -3'
miRNA:   3'- guCUAUGAGCC--------------U-CCGGUCGCU--UGCac -5'
14618 5' -54.5 NC_003521.1 + 212414 0.72 0.803382
Target:  5'- cCAGGUugUCGGAGGCguugaucUGGCGAcacuCGUGc -3'
miRNA:   3'- -GUCUAugAGCCUCCG-------GUCGCUu---GCAC- -5'
14618 5' -54.5 NC_003521.1 + 212012 0.67 0.960332
Target:  5'- uGGGUACUCGG-GGCCGuGUGccaaGUGg -3'
miRNA:   3'- gUCUAUGAGCCuCCGGU-CGCuug-CAC- -5'
14618 5' -54.5 NC_003521.1 + 202024 0.68 0.944611
Target:  5'- cCAGGU-C-CGGGGGuCCGGCGAAUGc- -3'
miRNA:   3'- -GUCUAuGaGCCUCC-GGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 200303 0.69 0.902289
Target:  5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3'
miRNA:   3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 196042 0.69 0.919879
Target:  5'- gCAGGUugUagagcaccgggCGGaAGGCCGGCGAG-GUGg -3'
miRNA:   3'- -GUCUAugA-----------GCC-UCCGGUCGCUUgCAC- -5'
14618 5' -54.5 NC_003521.1 + 188513 0.76 0.571317
Target:  5'- gAGAUACgaGGAGGCCGGCGGGCc-- -3'
miRNA:   3'- gUCUAUGagCCUCCGGUCGCUUGcac -5'
14618 5' -54.5 NC_003521.1 + 186764 0.68 0.935407
Target:  5'- uCGGcgGCaucggCGGAGG-CGGCGGugGUGg -3'
miRNA:   3'- -GUCuaUGa----GCCUCCgGUCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 179483 0.66 0.981955
Target:  5'- aCGGGUACgcucCGGcAGcGCCGGgGAacACGUGu -3'
miRNA:   3'- -GUCUAUGa---GCC-UC-CGGUCgCU--UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 174372 0.67 0.960332
Target:  5'- gUAGAUACUCGGAcaCCAGC--GCGUc -3'
miRNA:   3'- -GUCUAUGAGCCUccGGUCGcuUGCAc -5'
14618 5' -54.5 NC_003521.1 + 173433 0.68 0.952912
Target:  5'- uGGAUGCccguggUCagGGAGGCCAGCGAcaucugcaACGg- -3'
miRNA:   3'- gUCUAUG------AG--CCUCCGGUCGCU--------UGCac -5'
14618 5' -54.5 NC_003521.1 + 170163 0.68 0.944611
Target:  5'- aAGAuaUACUCGGuGGUCgacuucggAGCGGugGUGc -3'
miRNA:   3'- gUCU--AUGAGCCuCCGG--------UCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 168067 0.67 0.969882
Target:  5'- gCGGGUGCUCgagacgcgGGGGGCUgcagaggucGGCGAagaccgaggagGCGUGg -3'
miRNA:   3'- -GUCUAUGAG--------CCUCCGG---------UCGCU-----------UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 166847 0.71 0.853568
Target:  5'- aGGAUACgcaggCGGuGGCgCGGCGGGCGc- -3'
miRNA:   3'- gUCUAUGa----GCCuCCG-GUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 164954 0.71 0.829689
Target:  5'- uCAGGUGCUCa-AGGCCGuGaCGAACGUGc -3'
miRNA:   3'- -GUCUAUGAGccUCCGGU-C-GCUUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 163476 0.69 0.919879
Target:  5'- aGGAUGaugagacCGGGGGCgaaAGCGAAUGUGg -3'
miRNA:   3'- gUCUAUga-----GCCUCCGg--UCGCUUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.