Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14618 | 5' | -54.5 | NC_003521.1 | + | 6613 | 0.68 | 0.935407 |
Target: 5'- aCGGAaccgucUUCGGAGGCCGcgcGCGAACGc- -3' miRNA: 3'- -GUCUau----GAGCCUCCGGU---CGCUUGCac -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 238524 | 0.68 | 0.930461 |
Target: 5'- gCAGGUgcgagaGCUCGucGGCCAGCGggUagagGUGg -3' miRNA: 3'- -GUCUA------UGAGCcuCCGGUCGCuuG----CAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 38297 | 0.68 | 0.930461 |
Target: 5'- gCAGGUgcgagaGCUCGucGGCCAGCGggUagagGUGg -3' miRNA: 3'- -GUCUA------UGAGCcuCCGGUCGCuuG----CAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 163476 | 0.69 | 0.919879 |
Target: 5'- aGGAUGaugagacCGGGGGCgaaAGCGAAUGUGg -3' miRNA: 3'- gUCUAUga-----GCCUCCGg--UCGCUUGCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 77701 | 0.69 | 0.919879 |
Target: 5'- aCAGAUGCccgaGGAGG-CGGCGGugGUc -3' miRNA: 3'- -GUCUAUGag--CCUCCgGUCGCUugCAc -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 196042 | 0.69 | 0.919879 |
Target: 5'- gCAGGUugUagagcaccgggCGGaAGGCCGGCGAG-GUGg -3' miRNA: 3'- -GUCUAugA-----------GCC-UCCGGUCGCUUgCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 125453 | 0.69 | 0.914244 |
Target: 5'- gCAcAUGC-CGGcccuGGCCAGCGAcGCGUGa -3' miRNA: 3'- -GUcUAUGaGCCu---CCGGUCGCU-UGCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 123659 | 0.69 | 0.914244 |
Target: 5'- gCGGGUuagGCUUGGAGggaGCCGGCGcgcugcGGCGUGg -3' miRNA: 3'- -GUCUA---UGAGCCUC---CGGUCGC------UUGCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 152070 | 0.69 | 0.90838 |
Target: 5'- uGGAcuuCUCGGAGGaccaCGGCG-ACGUGc -3' miRNA: 3'- gUCUau-GAGCCUCCg---GUCGCuUGCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 133735 | 0.69 | 0.90838 |
Target: 5'- gAGAUGCUCGGuaugcuGGCCGGCaGGcccgGCGa- -3' miRNA: 3'- gUCUAUGAGCCu-----CCGGUCG-CU----UGCac -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 200303 | 0.69 | 0.902289 |
Target: 5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3' miRNA: 3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 75 | 0.69 | 0.902289 |
Target: 5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3' miRNA: 3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 240624 | 0.69 | 0.902289 |
Target: 5'- gCGGcGUGCggCGGGccGGCCGGuCGGACGUGu -3' miRNA: 3'- -GUC-UAUGa-GCCU--CCGGUC-GCUUGCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 103468 | 0.69 | 0.902289 |
Target: 5'- gCGGAUGCg-GGAGGgcggcuCCAGCGGgcccGCGUGa -3' miRNA: 3'- -GUCUAUGagCCUCC------GGUCGCU----UGCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 121379 | 0.69 | 0.902289 |
Target: 5'- cCAGGcuCUUGGGGGCCA-UGAugGUGa -3' miRNA: 3'- -GUCUauGAGCCUCCGGUcGCUugCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 81925 | 0.7 | 0.889436 |
Target: 5'- gGGGUACUUGGA-GCgGGCGGugGUc -3' miRNA: 3'- gUCUAUGAGCCUcCGgUCGCUugCAc -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 5397 | 0.7 | 0.880613 |
Target: 5'- aCGGGuUGCUCGGGGGCCucgcccgaggacgaGGCGGAgGa- -3' miRNA: 3'- -GUCU-AUGAGCCUCCGG--------------UCGCUUgCac -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 166847 | 0.71 | 0.853568 |
Target: 5'- aGGAUACgcaggCGGuGGCgCGGCGGGCGc- -3' miRNA: 3'- gUCUAUGa----GCCuCCG-GUCGCUUGCac -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 164954 | 0.71 | 0.829689 |
Target: 5'- uCAGGUGCUCa-AGGCCGuGaCGAACGUGc -3' miRNA: 3'- -GUCUAUGAGccUCCGGU-C-GCUUGCAC- -5' |
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14618 | 5' | -54.5 | NC_003521.1 | + | 20627 | 0.71 | 0.821374 |
Target: 5'- cCAGAUguGCUCGGAGaGCCgcgcgcuggugGGCGccuACGUGa -3' miRNA: 3'- -GUCUA--UGAGCCUC-CGG-----------UCGCu--UGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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