miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 5' -54.5 NC_003521.1 + 105658 0.67 0.969882
Target:  5'- ----aGCUCGGGGGUgGGCGGcACGa- -3'
miRNA:   3'- gucuaUGAGCCUCCGgUCGCU-UGCac -5'
14618 5' -54.5 NC_003521.1 + 128944 0.67 0.969882
Target:  5'- aAGGUACguccgaaCGaGGGGCUGGCG-GCGUGg -3'
miRNA:   3'- gUCUAUGa------GC-CUCCGGUCGCuUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 168067 0.67 0.969882
Target:  5'- gCGGGUGCUCgagacgcgGGGGGCUgcagaggucGGCGAagaccgaggagGCGUGg -3'
miRNA:   3'- -GUCUAUGAG--------CCUCCGG---------UCGCU-----------UGCAC- -5'
14618 5' -54.5 NC_003521.1 + 218608 0.67 0.963721
Target:  5'- gAGGUACgguUCGGccGCCAGCGcGCGg- -3'
miRNA:   3'- gUCUAUG---AGCCucCGGUCGCuUGCac -5'
14618 5' -54.5 NC_003521.1 + 148386 0.67 0.963721
Target:  5'- gGGGUGCggGGAGGCUGGgGggUGa- -3'
miRNA:   3'- gUCUAUGagCCUCCGGUCgCuuGCac -5'
14618 5' -54.5 NC_003521.1 + 105890 0.67 0.963721
Target:  5'- gCAGAUGC-CGGGGGCguGU--ACGUa -3'
miRNA:   3'- -GUCUAUGaGCCUCCGguCGcuUGCAc -5'
14618 5' -54.5 NC_003521.1 + 212012 0.67 0.960332
Target:  5'- uGGGUACUCGG-GGCCGuGUGccaaGUGg -3'
miRNA:   3'- gUCUAUGAGCCuCCGGU-CGCuug-CAC- -5'
14618 5' -54.5 NC_003521.1 + 174372 0.67 0.960332
Target:  5'- gUAGAUACUCGGAcaCCAGC--GCGUc -3'
miRNA:   3'- -GUCUAUGAGCCUccGGUCGcuUGCAc -5'
14618 5' -54.5 NC_003521.1 + 156114 0.67 0.956731
Target:  5'- gGGAUccuggcAC-CGGAGGCCGGCcuGGAgGUGu -3'
miRNA:   3'- gUCUA------UGaGCCUCCGGUCG--CUUgCAC- -5'
14618 5' -54.5 NC_003521.1 + 153481 0.67 0.956731
Target:  5'- uCGGGcuccgGCUCGGGccgucuGGUCAGCGccAGCGUGg -3'
miRNA:   3'- -GUCUa----UGAGCCU------CCGGUCGC--UUGCAC- -5'
14618 5' -54.5 NC_003521.1 + 34663 0.67 0.956731
Target:  5'- cCAGG---UCGGAGGCCAGCu--CGUa -3'
miRNA:   3'- -GUCUaugAGCCUCCGGUCGcuuGCAc -5'
14618 5' -54.5 NC_003521.1 + 173433 0.68 0.952912
Target:  5'- uGGAUGCccguggUCagGGAGGCCAGCGAcaucugcaACGg- -3'
miRNA:   3'- gUCUAUG------AG--CCUCCGGUCGCU--------UGCac -5'
14618 5' -54.5 NC_003521.1 + 150532 0.68 0.952912
Target:  5'- gCGGGaGC-CGuGGGGuCCGGCGGugGUGg -3'
miRNA:   3'- -GUCUaUGaGC-CUCC-GGUCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 1797 0.68 0.944611
Target:  5'- cCAGGU-C-CGGGGGuCCGGCGAAUGc- -3'
miRNA:   3'- -GUCUAuGaGCCUCC-GGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 17228 0.68 0.944611
Target:  5'- gAGGU-CUCGGAGGCCgaGGUGGAgGc- -3'
miRNA:   3'- gUCUAuGAGCCUCCGG--UCGCUUgCac -5'
14618 5' -54.5 NC_003521.1 + 202024 0.68 0.944611
Target:  5'- cCAGGU-C-CGGGGGuCCGGCGAAUGc- -3'
miRNA:   3'- -GUCUAuGaGCCUCC-GGUCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 170163 0.68 0.944611
Target:  5'- aAGAuaUACUCGGuGGUCgacuucggAGCGGugGUGc -3'
miRNA:   3'- gUCU--AUGAGCCuCCGG--------UCGCUugCAC- -5'
14618 5' -54.5 NC_003521.1 + 57216 0.68 0.944611
Target:  5'- ----aACUCGGAGGCguagcucagaGGCGAGCGg- -3'
miRNA:   3'- gucuaUGAGCCUCCGg---------UCGCUUGCac -5'
14618 5' -54.5 NC_003521.1 + 218403 0.68 0.938732
Target:  5'- -cGGUACUCGGccacgccgcgcagcAuGGCCAGCGAcaGCGg- -3'
miRNA:   3'- guCUAUGAGCC--------------U-CCGGUCGCU--UGCac -5'
14618 5' -54.5 NC_003521.1 + 6613 0.68 0.935407
Target:  5'- aCGGAaccgucUUCGGAGGCCGcgcGCGAACGc- -3'
miRNA:   3'- -GUCUau----GAGCCUCCGGU---CGCUUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.