miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 3' -49.6 NC_003521.1 + 111245 0.79 0.721549
Target:  5'- gCCGGCGCGGCGcggCGGAGCa------- -3'
miRNA:   3'- -GGCCGCGCCGCa--GUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 112372 0.66 0.999614
Target:  5'- gCGGCuGCGGCGUCucguccaccuGGCUg------ -3'
miRNA:   3'- gGCCG-CGCCGCAGuu--------UCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 112795 0.66 0.999519
Target:  5'- aCCGcGUGCGGCG-CGAGGUg------- -3'
miRNA:   3'- -GGC-CGCGCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 113360 0.66 0.999405
Target:  5'- cUCGGCGCuggcgGGCGUCAAcaacggccAGCUg------ -3'
miRNA:   3'- -GGCCGCG-----CCGCAGUU--------UCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 114962 0.67 0.998603
Target:  5'- gCGGCugcuGCGGCGUCAgucgccuguugcgaAAGCU-GAUGg- -3'
miRNA:   3'- gGCCG----CGCCGCAGU--------------UUCGAaUUAUau -5'
14619 3' -49.6 NC_003521.1 + 117462 0.68 0.997731
Target:  5'- gUCGGUGCGGCuGUCGGAGg-------- -3'
miRNA:   3'- -GGCCGCGCCG-CAGUUUCgaauuauau -5'
14619 3' -49.6 NC_003521.1 + 117501 0.7 0.98979
Target:  5'- uCCGGCGgGGCGUac-GGCg--GUAUGc -3'
miRNA:   3'- -GGCCGCgCCGCAguuUCGaauUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 119043 0.68 0.99564
Target:  5'- gCGG-GCGGCGUCGGGGUg------- -3'
miRNA:   3'- gGCCgCGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 120558 0.69 0.991052
Target:  5'- cCCGGUGCuuuuugGGUGUCGAGGCg------- -3'
miRNA:   3'- -GGCCGCG------CCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 122653 0.68 0.99731
Target:  5'- gCCGGCG-GGCGUCGucuGCggcGGUGg- -3'
miRNA:   3'- -GGCCGCgCCGCAGUuu-CGaa-UUAUau -5'
14619 3' -49.6 NC_003521.1 + 123495 0.67 0.998909
Target:  5'- gCCGGCGgGGUGUCGucGUc------- -3'
miRNA:   3'- -GGCCGCgCCGCAGUuuCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 125733 0.69 0.994924
Target:  5'- gCGGCGaCGGCG-CAGGGCa------- -3'
miRNA:   3'- gGCCGC-GCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 130923 0.67 0.998679
Target:  5'- aCGGCGuCGGCgGUCGAGGUc------- -3'
miRNA:   3'- gGCCGC-GCCG-CAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 132603 0.67 0.999103
Target:  5'- gCGGCGuCGGCGUCcgcaacGGCUUc----- -3'
miRNA:   3'- gGCCGC-GCCGCAGuu----UCGAAuuauau -5'
14619 3' -49.6 NC_003521.1 + 135821 0.67 0.999103
Target:  5'- -aGGCGCGGCGaCGAAcGCUc------ -3'
miRNA:   3'- ggCCGCGCCGCaGUUU-CGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 136180 0.67 0.998909
Target:  5'- -aGGCgGCGGCGUC-GAGCaUGAa--- -3'
miRNA:   3'- ggCCG-CGCCGCAGuUUCGaAUUauau -5'
14619 3' -49.6 NC_003521.1 + 136650 0.68 0.996826
Target:  5'- gCGGgGCGGCGgcgaCAGAGCa------- -3'
miRNA:   3'- gGCCgCGCCGCa---GUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 136773 0.74 0.914187
Target:  5'- gCUGGCGCagacGGCGUCGGAGCacugcGUGUAc -3'
miRNA:   3'- -GGCCGCG----CCGCAGUUUCGaau--UAUAU- -5'
14619 3' -49.6 NC_003521.1 + 150672 0.69 0.994924
Target:  5'- uCCGGCgGCGGCGcCGcuGCUgcugGGUGc- -3'
miRNA:   3'- -GGCCG-CGCCGCaGUuuCGAa---UUAUau -5'
14619 3' -49.6 NC_003521.1 + 152905 0.69 0.992188
Target:  5'- cCCGGCGCGGCGgccagccaggagUCGuuGCUc------ -3'
miRNA:   3'- -GGCCGCGCCGC------------AGUuuCGAauuauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.