miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 3' -49.6 NC_003521.1 + 73767 0.68 0.996271
Target:  5'- gCCGGCacCGGCGUCAuGAGCg------- -3'
miRNA:   3'- -GGCCGc-GCCGCAGU-UUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 74589 0.71 0.971307
Target:  5'- gCGGCGCGGCGUCccgcGGCc------- -3'
miRNA:   3'- gGCCGCGCCGCAGuu--UCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 74756 0.66 0.999519
Target:  5'- aCUGGCGuCGcCGUCGAcguGGCUggAGUAUGa -3'
miRNA:   3'- -GGCCGC-GCcGCAGUU---UCGAa-UUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 75324 0.68 0.99731
Target:  5'- -gGGCGCcgaGGCG-CAGAGCUgcgAGUAc- -3'
miRNA:   3'- ggCCGCG---CCGCaGUUUCGAa--UUAUau -5'
14619 3' -49.6 NC_003521.1 + 77737 0.67 0.99841
Target:  5'- cUCGGUggGCGGCGUCugguagugguuGGGCagGAUGUAg -3'
miRNA:   3'- -GGCCG--CGCCGCAGu----------UUCGaaUUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 78207 0.67 0.998096
Target:  5'- gCgGGCGCGGCGcUCGucggAGGCUg------ -3'
miRNA:   3'- -GgCCGCGCCGC-AGU----UUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 79634 0.67 0.998909
Target:  5'- gCGGCGCcucGGCGUCGucuGCUg------ -3'
miRNA:   3'- gGCCGCG---CCGCAGUuu-CGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 86890 0.68 0.995572
Target:  5'- aCGGCGCGGCGgguggccgaggagUgGAAGCUg------ -3'
miRNA:   3'- gGCCGCGCCGC-------------AgUUUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 89758 0.71 0.979072
Target:  5'- gCCGGCGCGGC--CGAAGaCgagAGUAUGu -3'
miRNA:   3'- -GGCCGCGCCGcaGUUUC-Gaa-UUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 91031 0.66 0.999719
Target:  5'- gCCGGCcguucgcggaacgccGUGGCGUUGAGGCg------- -3'
miRNA:   3'- -GGCCG---------------CGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 91974 0.66 0.999267
Target:  5'- gCUGGCGCGGUG-CAcGGCa------- -3'
miRNA:   3'- -GGCCGCGCCGCaGUuUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 97126 0.66 0.999519
Target:  5'- -aGGCGCGGCGgu--AGCUg------ -3'
miRNA:   3'- ggCCGCGCCGCaguuUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 98645 0.7 0.986851
Target:  5'- gCGGUaGCGGCGUCGacgacggcGAGCUUGc---- -3'
miRNA:   3'- gGCCG-CGCCGCAGU--------UUCGAAUuauau -5'
14619 3' -49.6 NC_003521.1 + 99248 0.68 0.996826
Target:  5'- aCGGUGCGcGCGUCGucGCg------- -3'
miRNA:   3'- gGCCGCGC-CGCAGUuuCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 102956 0.71 0.979072
Target:  5'- uCCaGGCGCucgGGCGUCGGGGCUc------ -3'
miRNA:   3'- -GG-CCGCG---CCGCAGUUUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 104171 0.66 0.999519
Target:  5'- gCGGCGCGG-GUCGcacGGCgUUGcgGUAg -3'
miRNA:   3'- gGCCGCGCCgCAGUu--UCG-AAUuaUAU- -5'
14619 3' -49.6 NC_003521.1 + 105214 0.67 0.999103
Target:  5'- cCCGcgagcuGCGCGGCGUCAagaaaAAGCg------- -3'
miRNA:   3'- -GGC------CGCGCCGCAGU-----UUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 107076 0.66 0.999519
Target:  5'- uCCGG-GCGGUGUCGuaGAGU--GAUAUu -3'
miRNA:   3'- -GGCCgCGCCGCAGU--UUCGaaUUAUAu -5'
14619 3' -49.6 NC_003521.1 + 110068 0.67 0.99841
Target:  5'- cCCGGCGCGGCGcUCGc-GCc------- -3'
miRNA:   3'- -GGCCGCGCCGC-AGUuuCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 111182 0.66 0.999614
Target:  5'- cCCGGCGaCGGCGcCGcggacgguGGGCUgggcGAUGg- -3'
miRNA:   3'- -GGCCGC-GCCGCaGU--------UUCGAa---UUAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.