miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 3' -49.6 NC_003521.1 + 181125 0.7 0.985157
Target:  5'- aCGGCGCGGCaGUUGAGGUa------- -3'
miRNA:   3'- gGCCGCGCCG-CAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 208081 0.7 0.985157
Target:  5'- gCGGUGUGGCG-CAGAGCg------- -3'
miRNA:   3'- gGCCGCGCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 98645 0.7 0.986851
Target:  5'- gCGGUaGCGGCGUCGacgacggcGAGCUUGc---- -3'
miRNA:   3'- gGCCG-CGCCGCAGU--------UUCGAAUuauau -5'
14619 3' -49.6 NC_003521.1 + 43566 0.7 0.988393
Target:  5'- gCCGGCGCcGCGUCA-AGCa------- -3'
miRNA:   3'- -GGCCGCGcCGCAGUuUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 117501 0.7 0.98979
Target:  5'- uCCGGCGgGGCGUac-GGCg--GUAUGc -3'
miRNA:   3'- -GGCCGCgCCGCAguuUCGaauUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 185293 0.7 0.98979
Target:  5'- gUCGGCGCGGCGcUCGcuGCg------- -3'
miRNA:   3'- -GGCCGCGCCGC-AGUuuCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 184582 0.7 0.98979
Target:  5'- --cGCGCGGCGUCAcGGUgUAAUGc- -3'
miRNA:   3'- ggcCGCGCCGCAGUuUCGaAUUAUau -5'
14619 3' -49.6 NC_003521.1 + 198462 0.69 0.991052
Target:  5'- gUCGGCugGCGGUGUCGAcaGGCUUuuUGc- -3'
miRNA:   3'- -GGCCG--CGCCGCAGUU--UCGAAuuAUau -5'
14619 3' -49.6 NC_003521.1 + 44909 0.69 0.991052
Target:  5'- aCGGCGCGGCGgCGAGGacgAAg--- -3'
miRNA:   3'- gGCCGCGCCGCaGUUUCgaaUUauau -5'
14619 3' -49.6 NC_003521.1 + 120558 0.69 0.991052
Target:  5'- cCCGGUGCuuuuugGGUGUCGAGGCg------- -3'
miRNA:   3'- -GGCCGCG------CCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 155613 0.69 0.991052
Target:  5'- uCCGGCGCGGCG-CcGGGUgacgcAGUGUc -3'
miRNA:   3'- -GGCCGCGCCGCaGuUUCGaa---UUAUAu -5'
14619 3' -49.6 NC_003521.1 + 176078 0.69 0.992188
Target:  5'- gCCGGC-CGGCGUCuuGGCc------- -3'
miRNA:   3'- -GGCCGcGCCGCAGuuUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 166437 0.69 0.992188
Target:  5'- cCCGGCGUGGCagc-GGGCUU-AUAUAg -3'
miRNA:   3'- -GGCCGCGCCGcaguUUCGAAuUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 152905 0.69 0.992188
Target:  5'- cCCGGCGCGGCGgccagccaggagUCGuuGCUc------ -3'
miRNA:   3'- -GGCCGCGCCGC------------AGUuuCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 176952 0.69 0.992609
Target:  5'- cCCGGCGCGccgccucguccaccuGUGUCAGGGcCUUGGa--- -3'
miRNA:   3'- -GGCCGCGC---------------CGCAGUUUC-GAAUUauau -5'
14619 3' -49.6 NC_003521.1 + 47397 0.69 0.994115
Target:  5'- -gGGCGCuGCGcgagCGGAGCUgGAUGUAg -3'
miRNA:   3'- ggCCGCGcCGCa---GUUUCGAaUUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 150672 0.69 0.994924
Target:  5'- uCCGGCgGCGGCGcCGcuGCUgcugGGUGc- -3'
miRNA:   3'- -GGCCG-CGCCGCaGUuuCGAa---UUAUau -5'
14619 3' -49.6 NC_003521.1 + 125733 0.69 0.994924
Target:  5'- gCGGCGaCGGCG-CAGGGCa------- -3'
miRNA:   3'- gGCCGC-GCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 86890 0.68 0.995572
Target:  5'- aCGGCGCGGCGgguggccgaggagUgGAAGCUg------ -3'
miRNA:   3'- gGCCGCGCCGC-------------AgUUUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 223931 0.68 0.995572
Target:  5'- -aGGCGCGGCcgaggggGUCGAGGCg------- -3'
miRNA:   3'- ggCCGCGCCG-------CAGUUUCGaauuauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.