Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14619 | 3' | -49.6 | NC_003521.1 | + | 104171 | 0.66 | 0.999519 |
Target: 5'- gCGGCGCGG-GUCGcacGGCgUUGcgGUAg -3' miRNA: 3'- gGCCGCGCCgCAGUu--UCG-AAUuaUAU- -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 171725 | 0.66 | 0.999405 |
Target: 5'- gCCGGCGUGGUGUUGGAaCUg------ -3' miRNA: 3'- -GGCCGCGCCGCAGUUUcGAauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 226600 | 0.66 | 0.999405 |
Target: 5'- aCGGCguagcccaGCGGCGUCAGGGgCUc------ -3' miRNA: 3'- gGCCG--------CGCCGCAGUUUC-GAauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 113360 | 0.66 | 0.999405 |
Target: 5'- cUCGGCGCuggcgGGCGUCAAcaacggccAGCUg------ -3' miRNA: 3'- -GGCCGCG-----CCGCAGUU--------UCGAauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 6086 | 0.66 | 0.999267 |
Target: 5'- gCCGGUGCGGCGgcguuccgcCAcGGCUaucugguugUGAUAg- -3' miRNA: 3'- -GGCCGCGCCGCa--------GUuUCGA---------AUUAUau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 239268 | 0.66 | 0.999267 |
Target: 5'- gCgGGUGUGGCGcCGAGGCg------- -3' miRNA: 3'- -GgCCGCGCCGCaGUUUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 39040 | 0.66 | 0.999267 |
Target: 5'- gCgGGUGUGGCGcCGAGGCg------- -3' miRNA: 3'- -GgCCGCGCCGCaGUUUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 91974 | 0.66 | 0.999267 |
Target: 5'- gCUGGCGCGGUG-CAcGGCa------- -3' miRNA: 3'- -GGCCGCGCCGCaGUuUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 135821 | 0.67 | 0.999103 |
Target: 5'- -aGGCGCGGCGaCGAAcGCUc------ -3' miRNA: 3'- ggCCGCGCCGCaGUUU-CGAauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 168443 | 0.67 | 0.999103 |
Target: 5'- gCGGCG-GGCGUgaAGAGCgUGAUGg- -3' miRNA: 3'- gGCCGCgCCGCAg-UUUCGaAUUAUau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 105214 | 0.67 | 0.999103 |
Target: 5'- cCCGcgagcuGCGCGGCGUCAagaaaAAGCg------- -3' miRNA: 3'- -GGC------CGCGCCGCAGU-----UUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 132603 | 0.67 | 0.999103 |
Target: 5'- gCGGCGuCGGCGUCcgcaacGGCUUc----- -3' miRNA: 3'- gGCCGC-GCCGCAGuu----UCGAAuuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 136180 | 0.67 | 0.998909 |
Target: 5'- -aGGCgGCGGCGUC-GAGCaUGAa--- -3' miRNA: 3'- ggCCG-CGCCGCAGuUUCGaAUUauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 79634 | 0.67 | 0.998909 |
Target: 5'- gCGGCGCcucGGCGUCGucuGCUg------ -3' miRNA: 3'- gGCCGCG---CCGCAGUuu-CGAauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 123495 | 0.67 | 0.998909 |
Target: 5'- gCCGGCGgGGUGUCGucGUc------- -3' miRNA: 3'- -GGCCGCgCCGCAGUuuCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 191628 | 0.67 | 0.998679 |
Target: 5'- gCUGuGCGCGGCGaagCGagcgaGAGCUUGggGUGUGu -3' miRNA: 3'- -GGC-CGCGCCGCa--GU-----UUCGAAU--UAUAU- -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 130923 | 0.67 | 0.998679 |
Target: 5'- aCGGCGuCGGCgGUCGAGGUc------- -3' miRNA: 3'- gGCCGC-GCCG-CAGUUUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 221907 | 0.67 | 0.998654 |
Target: 5'- gCCGGCgcGCGGCGccacccuUCGGGGCUg------ -3' miRNA: 3'- -GGCCG--CGCCGC-------AGUUUCGAauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 114962 | 0.67 | 0.998603 |
Target: 5'- gCGGCugcuGCGGCGUCAgucgccuguugcgaAAGCU-GAUGg- -3' miRNA: 3'- gGCCG----CGCCGCAGU--------------UUCGAaUUAUau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 77737 | 0.67 | 0.99841 |
Target: 5'- cUCGGUggGCGGCGUCugguagugguuGGGCagGAUGUAg -3' miRNA: 3'- -GGCCG--CGCCGCAGu----------UUCGaaUUAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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