miRNA display CGI


Results 41 - 60 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 3' -49.6 NC_003521.1 + 110068 0.67 0.99841
Target:  5'- cCCGGCGCGGCGcUCGc-GCc------- -3'
miRNA:   3'- -GGCCGCGCCGC-AGUuuCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 1046 0.67 0.998096
Target:  5'- aUGGC-CGGCGUCGGGGCc------- -3'
miRNA:   3'- gGCCGcGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 78207 0.67 0.998096
Target:  5'- gCgGGCGCGGCGcUCGucggAGGCUg------ -3'
miRNA:   3'- -GgCCGCGCCGC-AGU----UUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 19744 0.67 0.998096
Target:  5'- gCGGUGaCGGCGUC-GGGCUUc----- -3'
miRNA:   3'- gGCCGC-GCCGCAGuUUCGAAuuauau -5'
14619 3' -49.6 NC_003521.1 + 201274 0.67 0.998096
Target:  5'- aUGGC-CGGCGUCGGGGCc------- -3'
miRNA:   3'- gGCCGcGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 117462 0.68 0.997731
Target:  5'- gUCGGUGCGGCuGUCGGAGg-------- -3'
miRNA:   3'- -GGCCGCGCCG-CAGUUUCgaauuauau -5'
14619 3' -49.6 NC_003521.1 + 75324 0.68 0.99731
Target:  5'- -gGGCGCcgaGGCG-CAGAGCUgcgAGUAc- -3'
miRNA:   3'- ggCCGCG---CCGCaGUUUCGAa--UUAUau -5'
14619 3' -49.6 NC_003521.1 + 122653 0.68 0.99731
Target:  5'- gCCGGCG-GGCGUCGucuGCggcGGUGg- -3'
miRNA:   3'- -GGCCGCgCCGCAGUuu-CGaa-UUAUau -5'
14619 3' -49.6 NC_003521.1 + 176294 0.68 0.99731
Target:  5'- aCgGGCGuCGGCGUCGucGCg------- -3'
miRNA:   3'- -GgCCGC-GCCGCAGUuuCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 194017 0.68 0.99731
Target:  5'- aCCGGCgGCGGCGUCAu----------- -3'
miRNA:   3'- -GGCCG-CGCCGCAGUuucgaauuauau -5'
14619 3' -49.6 NC_003521.1 + 17366 0.68 0.997265
Target:  5'- gCCGGCGCGGCGgccCAGAcucgagagggaccGCUcccUAUAu -3'
miRNA:   3'- -GGCCGCGCCGCa--GUUU-------------CGAauuAUAU- -5'
14619 3' -49.6 NC_003521.1 + 136650 0.68 0.996826
Target:  5'- gCGGgGCGGCGgcgaCAGAGCa------- -3'
miRNA:   3'- gGCCgCGCCGCa---GUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 99248 0.68 0.996826
Target:  5'- aCGGUGCGcGCGUCGucGCg------- -3'
miRNA:   3'- gGCCGCGC-CGCAGUuuCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 173464 0.68 0.996271
Target:  5'- aCCGGCgguaGUGGCGUCGAuaccGGCcUGAUu-- -3'
miRNA:   3'- -GGCCG----CGCCGCAGUU----UCGaAUUAuau -5'
14619 3' -49.6 NC_003521.1 + 73767 0.68 0.996271
Target:  5'- gCCGGCacCGGCGUCAuGAGCg------- -3'
miRNA:   3'- -GGCCGc-GCCGCAGU-UUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 119043 0.68 0.99564
Target:  5'- gCGG-GCGGCGUCGGGGUg------- -3'
miRNA:   3'- gGCCgCGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 86890 0.68 0.995572
Target:  5'- aCGGCGCGGCGgguggccgaggagUgGAAGCUg------ -3'
miRNA:   3'- gGCCGCGCCGC-------------AgUUUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 223931 0.68 0.995572
Target:  5'- -aGGCGCGGCcgaggggGUCGAGGCg------- -3'
miRNA:   3'- ggCCGCGCCG-------CAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 125733 0.69 0.994924
Target:  5'- gCGGCGaCGGCG-CAGGGCa------- -3'
miRNA:   3'- gGCCGC-GCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 150672 0.69 0.994924
Target:  5'- uCCGGCgGCGGCGcCGcuGCUgcugGGUGc- -3'
miRNA:   3'- -GGCCG-CGCCGCaGUuuCGAa---UUAUau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.