miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 3' -49.6 NC_003521.1 + 17425 0.66 0.999692
Target:  5'- gCCGGgGCGccacacggcccGCGUCGGGGCgccgcGAUGUc -3'
miRNA:   3'- -GGCCgCGC-----------CGCAGUUUCGaa---UUAUAu -5'
14619 3' -49.6 NC_003521.1 + 104171 0.66 0.999519
Target:  5'- gCGGCGCGG-GUCGcacGGCgUUGcgGUAg -3'
miRNA:   3'- gGCCGCGCCgCAGUu--UCG-AAUuaUAU- -5'
14619 3' -49.6 NC_003521.1 + 171725 0.66 0.999405
Target:  5'- gCCGGCGUGGUGUUGGAaCUg------ -3'
miRNA:   3'- -GGCCGCGCCGCAGUUUcGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 209103 0.66 0.999692
Target:  5'- gUGGcCGCGGCGUCccAGCa------- -3'
miRNA:   3'- gGCC-GCGCCGCAGuuUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 193181 0.66 0.999519
Target:  5'- gCCGGCGgGaGCGgCGGAGCgUGAa--- -3'
miRNA:   3'- -GGCCGCgC-CGCaGUUUCGaAUUauau -5'
14619 3' -49.6 NC_003521.1 + 18853 0.66 0.999519
Target:  5'- aCGaGUGCGGCGU-GGAGCUgucGUGUc -3'
miRNA:   3'- gGC-CGCGCCGCAgUUUCGAau-UAUAu -5'
14619 3' -49.6 NC_003521.1 + 112795 0.66 0.999519
Target:  5'- aCCGcGUGCGGCG-CGAGGUg------- -3'
miRNA:   3'- -GGC-CGCGCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 97126 0.66 0.999519
Target:  5'- -aGGCGCGGCGgu--AGCUg------ -3'
miRNA:   3'- ggCCGCGCCGCaguuUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 168443 0.67 0.999103
Target:  5'- gCGGCG-GGCGUgaAGAGCgUGAUGg- -3'
miRNA:   3'- gGCCGCgCCGCAg-UUUCGaAUUAUau -5'
14619 3' -49.6 NC_003521.1 + 114962 0.67 0.998603
Target:  5'- gCGGCugcuGCGGCGUCAgucgccuguugcgaAAGCU-GAUGg- -3'
miRNA:   3'- gGCCG----CGCCGCAGU--------------UUCGAaUUAUau -5'
14619 3' -49.6 NC_003521.1 + 221907 0.67 0.998654
Target:  5'- gCCGGCgcGCGGCGccacccuUCGGGGCUg------ -3'
miRNA:   3'- -GGCCG--CGCCGC-------AGUUUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 191628 0.67 0.998679
Target:  5'- gCUGuGCGCGGCGaagCGagcgaGAGCUUGggGUGUGu -3'
miRNA:   3'- -GGC-CGCGCCGCa--GU-----UUCGAAU--UAUAU- -5'
14619 3' -49.6 NC_003521.1 + 78207 0.67 0.998096
Target:  5'- gCgGGCGCGGCGcUCGucggAGGCUg------ -3'
miRNA:   3'- -GgCCGCGCCGC-AGU----UUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 130923 0.67 0.998679
Target:  5'- aCGGCGuCGGCgGUCGAGGUc------- -3'
miRNA:   3'- gGCCGC-GCCG-CAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 79634 0.67 0.998909
Target:  5'- gCGGCGCcucGGCGUCGucuGCUg------ -3'
miRNA:   3'- gGCCGCG---CCGCAGUuu-CGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 136180 0.67 0.998909
Target:  5'- -aGGCgGCGGCGUC-GAGCaUGAa--- -3'
miRNA:   3'- ggCCG-CGCCGCAGuUUCGaAUUauau -5'
14619 3' -49.6 NC_003521.1 + 123495 0.67 0.998909
Target:  5'- gCCGGCGgGGUGUCGucGUc------- -3'
miRNA:   3'- -GGCCGCgCCGCAGUuuCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 132603 0.67 0.999103
Target:  5'- gCGGCGuCGGCGUCcgcaacGGCUUc----- -3'
miRNA:   3'- gGCCGC-GCCGCAGuu----UCGAAuuauau -5'
14619 3' -49.6 NC_003521.1 + 135821 0.67 0.999103
Target:  5'- -aGGCGCGGCGaCGAAcGCUc------ -3'
miRNA:   3'- ggCCGCGCCGCaGUUU-CGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 105214 0.67 0.999103
Target:  5'- cCCGcgagcuGCGCGGCGUCAagaaaAAGCg------- -3'
miRNA:   3'- -GGC------CGCGCCGCAGU-----UUCGaauuauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.