miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 3' -49.6 NC_003521.1 + 1046 0.67 0.998096
Target:  5'- aUGGC-CGGCGUCGGGGCc------- -3'
miRNA:   3'- gGCCGcGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 6086 0.66 0.999267
Target:  5'- gCCGGUGCGGCGgcguuccgcCAcGGCUaucugguugUGAUAg- -3'
miRNA:   3'- -GGCCGCGCCGCa--------GUuUCGA---------AUUAUau -5'
14619 3' -49.6 NC_003521.1 + 13802 0.73 0.949972
Target:  5'- -aGGCGCGuuuccacgucaGCGUCGGGGUUUGGUGUc -3'
miRNA:   3'- ggCCGCGC-----------CGCAGUUUCGAAUUAUAu -5'
14619 3' -49.6 NC_003521.1 + 13988 0.72 0.954104
Target:  5'- cCCGGCGCGGCGgc-GGGCg------- -3'
miRNA:   3'- -GGCCGCGCCGCaguUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 17366 0.68 0.997265
Target:  5'- gCCGGCGCGGCGgccCAGAcucgagagggaccGCUcccUAUAu -3'
miRNA:   3'- -GGCCGCGCCGCa--GUUU-------------CGAauuAUAU- -5'
14619 3' -49.6 NC_003521.1 + 17425 0.66 0.999692
Target:  5'- gCCGGgGCGccacacggcccGCGUCGGGGCgccgcGAUGUc -3'
miRNA:   3'- -GGCCgCGC-----------CGCAGUUUCGaa---UUAUAu -5'
14619 3' -49.6 NC_003521.1 + 18853 0.66 0.999519
Target:  5'- aCGaGUGCGGCGU-GGAGCUgucGUGUc -3'
miRNA:   3'- gGC-CGCGCCGCAgUUUCGAau-UAUAu -5'
14619 3' -49.6 NC_003521.1 + 19064 0.73 0.949972
Target:  5'- gCGGCGCGGCG-CAGAcGCUg------ -3'
miRNA:   3'- gGCCGCGCCGCaGUUU-CGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 19744 0.67 0.998096
Target:  5'- gCGGUGaCGGCGUC-GGGCUUc----- -3'
miRNA:   3'- gGCCGC-GCCGCAGuUUCGAAuuauau -5'
14619 3' -49.6 NC_003521.1 + 26559 0.74 0.920043
Target:  5'- gCCaGCGaCGGCGUCAGGGCgau-UGUGa -3'
miRNA:   3'- -GGcCGC-GCCGCAGUUUCGaauuAUAU- -5'
14619 3' -49.6 NC_003521.1 + 28862 0.66 0.999614
Target:  5'- gCGGCGCGGCacgGUCGAgucgcccaAGCUc------ -3'
miRNA:   3'- gGCCGCGCCG---CAGUU--------UCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 39040 0.66 0.999267
Target:  5'- gCgGGUGUGGCGcCGAGGCg------- -3'
miRNA:   3'- -GgCCGCGCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 42572 0.73 0.949546
Target:  5'- aCGGCuaucgcuGCGGCGUCAGccAGCUauUGAUAg- -3'
miRNA:   3'- gGCCG-------CGCCGCAGUU--UCGA--AUUAUau -5'
14619 3' -49.6 NC_003521.1 + 43135 0.66 0.999614
Target:  5'- cUCGGCGCugGGCGUgGAGGUg------- -3'
miRNA:   3'- -GGCCGCG--CCGCAgUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 43566 0.7 0.988393
Target:  5'- gCCGGCGCcGCGUCA-AGCa------- -3'
miRNA:   3'- -GGCCGCGcCGCAGUuUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 44909 0.69 0.991052
Target:  5'- aCGGCGCGGCGgCGAGGacgAAg--- -3'
miRNA:   3'- gGCCGCGCCGCaGUUUCgaaUUauau -5'
14619 3' -49.6 NC_003521.1 + 47397 0.69 0.994115
Target:  5'- -gGGCGCuGCGcgagCGGAGCUgGAUGUAg -3'
miRNA:   3'- ggCCGCGcCGCa---GUUUCGAaUUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 53353 0.73 0.949972
Target:  5'- gCCGGCGCGGCGgCGGAGg-------- -3'
miRNA:   3'- -GGCCGCGCCGCaGUUUCgaauuauau -5'
14619 3' -49.6 NC_003521.1 + 53914 0.66 0.999685
Target:  5'- aCCGGCGCcccccuuGGaCGUCAGguAGCUg---GUGa -3'
miRNA:   3'- -GGCCGCG-------CC-GCAGUU--UCGAauuaUAU- -5'
14619 3' -49.6 NC_003521.1 + 68503 0.78 0.7386
Target:  5'- aCGGCcgaggccugcgccaGCGGCGUCAAGGCU--GUGUGg -3'
miRNA:   3'- gGCCG--------------CGCCGCAGUUUCGAauUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.