miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 3' -49.6 NC_003521.1 + 191628 0.67 0.998679
Target:  5'- gCUGuGCGCGGCGaagCGagcgaGAGCUUGggGUGUGu -3'
miRNA:   3'- -GGC-CGCGCCGCa--GU-----UUCGAAU--UAUAU- -5'
14619 3' -49.6 NC_003521.1 + 150672 0.69 0.994924
Target:  5'- uCCGGCgGCGGCGcCGcuGCUgcugGGUGc- -3'
miRNA:   3'- -GGCCG-CGCCGCaGUuuCGAa---UUAUau -5'
14619 3' -49.6 NC_003521.1 + 119043 0.68 0.99564
Target:  5'- gCGG-GCGGCGUCGGGGUg------- -3'
miRNA:   3'- gGCCgCGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 73767 0.68 0.996271
Target:  5'- gCCGGCacCGGCGUCAuGAGCg------- -3'
miRNA:   3'- -GGCCGc-GCCGCAGU-UUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 173464 0.68 0.996271
Target:  5'- aCCGGCgguaGUGGCGUCGAuaccGGCcUGAUu-- -3'
miRNA:   3'- -GGCCG----CGCCGCAGUU----UCGaAUUAuau -5'
14619 3' -49.6 NC_003521.1 + 201274 0.67 0.998096
Target:  5'- aUGGC-CGGCGUCGGGGCc------- -3'
miRNA:   3'- gGCCGcGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 77737 0.67 0.99841
Target:  5'- cUCGGUggGCGGCGUCugguagugguuGGGCagGAUGUAg -3'
miRNA:   3'- -GGCCG--CGCCGCAGu----------UUCGaaUUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 114962 0.67 0.998603
Target:  5'- gCGGCugcuGCGGCGUCAgucgccuguugcgaAAGCU-GAUGg- -3'
miRNA:   3'- gGCCG----CGCCGCAGU--------------UUCGAaUUAUau -5'
14619 3' -49.6 NC_003521.1 + 221907 0.67 0.998654
Target:  5'- gCCGGCgcGCGGCGccacccuUCGGGGCUg------ -3'
miRNA:   3'- -GGCCG--CGCCGC-------AGUUUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 47397 0.69 0.994115
Target:  5'- -gGGCGCuGCGcgagCGGAGCUgGAUGUAg -3'
miRNA:   3'- ggCCGCGcCGCa---GUUUCGAaUUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 120558 0.69 0.991052
Target:  5'- cCCGGUGCuuuuugGGUGUCGAGGCg------- -3'
miRNA:   3'- -GGCCGCG------CCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 44909 0.69 0.991052
Target:  5'- aCGGCGCGGCGgCGAGGacgAAg--- -3'
miRNA:   3'- gGCCGCGCCGCaGUUUCgaaUUauau -5'
14619 3' -49.6 NC_003521.1 + 26559 0.74 0.920043
Target:  5'- gCCaGCGaCGGCGUCAGGGCgau-UGUGa -3'
miRNA:   3'- -GGcCGC-GCCGCAGUUUCGaauuAUAU- -5'
14619 3' -49.6 NC_003521.1 + 19064 0.73 0.949972
Target:  5'- gCGGCGCGGCG-CAGAcGCUg------ -3'
miRNA:   3'- gGCCGCGCCGCaGUUU-CGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 74589 0.71 0.971307
Target:  5'- gCGGCGCGGCGUCccgcGGCc------- -3'
miRNA:   3'- gGCCGCGCCGCAGuu--UCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 216206 0.71 0.979072
Target:  5'- aCCGGCGCGGgGUCcuccuGGCa------- -3'
miRNA:   3'- -GGCCGCGCCgCAGuu---UCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 208081 0.7 0.985157
Target:  5'- gCGGUGUGGCG-CAGAGCg------- -3'
miRNA:   3'- gGCCGCGCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 43566 0.7 0.988393
Target:  5'- gCCGGCGCcGCGUCA-AGCa------- -3'
miRNA:   3'- -GGCCGCGcCGCAGUuUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 117501 0.7 0.98979
Target:  5'- uCCGGCGgGGCGUac-GGCg--GUAUGc -3'
miRNA:   3'- -GGCCGCgCCGCAguuUCGaauUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 184582 0.7 0.98979
Target:  5'- --cGCGCGGCGUCAcGGUgUAAUGc- -3'
miRNA:   3'- ggcCGCGCCGCAGUuUCGaAUUAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.