Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14619 | 3' | -49.6 | NC_003521.1 | + | 111245 | 0.79 | 0.721549 |
Target: 5'- gCCGGCGCGGCGcggCGGAGCa------- -3' miRNA: 3'- -GGCCGCGCCGCa--GUUUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 185293 | 0.7 | 0.98979 |
Target: 5'- gUCGGCGCGGCGcUCGcuGCg------- -3' miRNA: 3'- -GGCCGCGCCGC-AGUuuCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 155613 | 0.69 | 0.991052 |
Target: 5'- uCCGGCGCGGCG-CcGGGUgacgcAGUGUc -3' miRNA: 3'- -GGCCGCGCCGCaGuUUCGaa---UUAUAu -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 91031 | 0.66 | 0.999719 |
Target: 5'- gCCGGCcguucgcggaacgccGUGGCGUUGAGGCg------- -3' miRNA: 3'- -GGCCG---------------CGCCGCAGUUUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 42572 | 0.73 | 0.949546 |
Target: 5'- aCGGCuaucgcuGCGGCGUCAGccAGCUauUGAUAg- -3' miRNA: 3'- gGCCG-------CGCCGCAGUU--UCGA--AUUAUau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 13802 | 0.73 | 0.949972 |
Target: 5'- -aGGCGCGuuuccacgucaGCGUCGGGGUUUGGUGUc -3' miRNA: 3'- ggCCGCGC-----------CGCAGUUUCGAAUUAUAu -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 13988 | 0.72 | 0.954104 |
Target: 5'- cCCGGCGCGGCGgc-GGGCg------- -3' miRNA: 3'- -GGCCGCGCCGCaguUUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 170117 | 0.72 | 0.957999 |
Target: 5'- uCCGGCGCaGGCGcCGAcgcAGCUUGcgGc- -3' miRNA: 3'- -GGCCGCG-CCGCaGUU---UCGAAUuaUau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 182987 | 0.71 | 0.979072 |
Target: 5'- aCGGCGUucGGCGUCAccggccGAGCUUcAUGc- -3' miRNA: 3'- gGCCGCG--CCGCAGU------UUCGAAuUAUau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 98645 | 0.7 | 0.986851 |
Target: 5'- gCGGUaGCGGCGUCGacgacggcGAGCUUGc---- -3' miRNA: 3'- gGCCG-CGCCGCAGU--------UUCGAAUuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 198856 | 0.7 | 0.983302 |
Target: 5'- -aGGCGCGGCgGUCGAacAGCUg------ -3' miRNA: 3'- ggCCGCGCCG-CAGUU--UCGAauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 89758 | 0.71 | 0.979072 |
Target: 5'- gCCGGCGCGGC--CGAAGaCgagAGUAUGu -3' miRNA: 3'- -GGCCGCGCCGcaGUUUC-Gaa-UUAUAU- -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 68503 | 0.78 | 0.7386 |
Target: 5'- aCGGCcgaggccugcgccaGCGGCGUCAAGGCU--GUGUGg -3' miRNA: 3'- gGCCG--------------CGCCGCAGUUUCGAauUAUAU- -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 167778 | 0.7 | 0.983302 |
Target: 5'- aUGGCGUGGuCGUCGAAGUUg------ -3' miRNA: 3'- gGCCGCGCC-GCAGUUUCGAauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 136773 | 0.74 | 0.914187 |
Target: 5'- gCUGGCGCagacGGCGUCGGAGCacugcGUGUAc -3' miRNA: 3'- -GGCCGCG----CCGCAGUUUCGaau--UAUAU- -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 155384 | 0.71 | 0.976681 |
Target: 5'- gCCGGCGCGGaCGaCGAGGCc------- -3' miRNA: 3'- -GGCCGCGCC-GCaGUUUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 181125 | 0.7 | 0.985157 |
Target: 5'- aCGGCGCGGCaGUUGAGGUa------- -3' miRNA: 3'- gGCCGCGCCG-CAGUUUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 198462 | 0.69 | 0.991052 |
Target: 5'- gUCGGCugGCGGUGUCGAcaGGCUUuuUGc- -3' miRNA: 3'- -GGCCG--CGCCGCAGUU--UCGAAuuAUau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 166216 | 0.73 | 0.931009 |
Target: 5'- uUGGCGCGGCGgCGAGGCg------- -3' miRNA: 3'- gGCCGCGCCGCaGUUUCGaauuauau -5' |
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14619 | 3' | -49.6 | NC_003521.1 | + | 53353 | 0.73 | 0.949972 |
Target: 5'- gCCGGCGCGGCGgCGGAGg-------- -3' miRNA: 3'- -GGCCGCGCCGCaGUUUCgaauuauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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