miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 3' -49.6 NC_003521.1 + 239268 0.66 0.999267
Target:  5'- gCgGGUGUGGCGcCGAGGCg------- -3'
miRNA:   3'- -GgCCGCGCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 238226 0.66 0.999692
Target:  5'- gUCGGCaCGGCGUC-GAGCg------- -3'
miRNA:   3'- -GGCCGcGCCGCAGuUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 226600 0.66 0.999405
Target:  5'- aCGGCguagcccaGCGGCGUCAGGGgCUc------ -3'
miRNA:   3'- gGCCG--------CGCCGCAGUUUC-GAauuauau -5'
14619 3' -49.6 NC_003521.1 + 223931 0.68 0.995572
Target:  5'- -aGGCGCGGCcgaggggGUCGAGGCg------- -3'
miRNA:   3'- ggCCGCGCCG-------CAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 223418 1.1 0.015599
Target:  5'- cCCGGCGCGGCGUCAAAGCUUAAUAUAg -3'
miRNA:   3'- -GGCCGCGCCGCAGUUUCGAAUUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 223180 0.66 0.999692
Target:  5'- cCCGGUGCuGGCGUaCGuAGCUc------ -3'
miRNA:   3'- -GGCCGCG-CCGCA-GUuUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 221907 0.67 0.998654
Target:  5'- gCCGGCgcGCGGCGccacccuUCGGGGCUg------ -3'
miRNA:   3'- -GGCCG--CGCCGC-------AGUUUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 216206 0.71 0.979072
Target:  5'- aCCGGCGCGGgGUCcuccuGGCa------- -3'
miRNA:   3'- -GGCCGCGCCgCAGuu---UCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 209103 0.66 0.999692
Target:  5'- gUGGcCGCGGCGUCccAGCa------- -3'
miRNA:   3'- gGCC-GCGCCGCAGuuUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 208081 0.7 0.985157
Target:  5'- gCGGUGUGGCG-CAGAGCg------- -3'
miRNA:   3'- gGCCGCGCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 201274 0.67 0.998096
Target:  5'- aUGGC-CGGCGUCGGGGCc------- -3'
miRNA:   3'- gGCCGcGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 198856 0.7 0.983302
Target:  5'- -aGGCGCGGCgGUCGAacAGCUg------ -3'
miRNA:   3'- ggCCGCGCCG-CAGUU--UCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 198462 0.69 0.991052
Target:  5'- gUCGGCugGCGGUGUCGAcaGGCUUuuUGc- -3'
miRNA:   3'- -GGCCG--CGCCGCAGUU--UCGAAuuAUau -5'
14619 3' -49.6 NC_003521.1 + 194017 0.68 0.99731
Target:  5'- aCCGGCgGCGGCGUCAu----------- -3'
miRNA:   3'- -GGCCG-CGCCGCAGUuucgaauuauau -5'
14619 3' -49.6 NC_003521.1 + 193181 0.66 0.999519
Target:  5'- gCCGGCGgGaGCGgCGGAGCgUGAa--- -3'
miRNA:   3'- -GGCCGCgC-CGCaGUUUCGaAUUauau -5'
14619 3' -49.6 NC_003521.1 + 192312 0.66 0.999692
Target:  5'- gCGGUaGCGGCGUCGGcGGCa------- -3'
miRNA:   3'- gGCCG-CGCCGCAGUU-UCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 191628 0.67 0.998679
Target:  5'- gCUGuGCGCGGCGaagCGagcgaGAGCUUGggGUGUGu -3'
miRNA:   3'- -GGC-CGCGCCGCa--GU-----UUCGAAU--UAUAU- -5'
14619 3' -49.6 NC_003521.1 + 185293 0.7 0.98979
Target:  5'- gUCGGCGCGGCGcUCGcuGCg------- -3'
miRNA:   3'- -GGCCGCGCCGC-AGUuuCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 184582 0.7 0.98979
Target:  5'- --cGCGCGGCGUCAcGGUgUAAUGc- -3'
miRNA:   3'- ggcCGCGCCGCAGUuUCGaAUUAUau -5'
14619 3' -49.6 NC_003521.1 + 182987 0.71 0.979072
Target:  5'- aCGGCGUucGGCGUCAccggccGAGCUUcAUGc- -3'
miRNA:   3'- gGCCGCG--CCGCAGU------UUCGAAuUAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.