Results 61 - 80 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 181863 | 0.67 | 0.681887 |
Target: 5'- cGGCGCGCUUCUucgcGCCagagGGCCUgguggaguUCGAGg -3' miRNA: 3'- -CCGCGCGGAGG----UGGag--CCGGA--------GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 18187 | 0.67 | 0.680955 |
Target: 5'- uGCGCGCCUgCCgGCCcuucgaucacaugUCGGCCgCgGAGu -3' miRNA: 3'- cCGCGCGGA-GG-UGG-------------AGCCGGaGgCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 121381 | 0.67 | 0.679092 |
Target: 5'- -uCGCGCCUCCAUCgcgaguacaUCGugcaggugcagaacGCCUUCGAGa -3' miRNA: 3'- ccGCGCGGAGGUGG---------AGC--------------CGGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 207287 | 0.67 | 0.672559 |
Target: 5'- cGGC-CGCCUUUACUucaUCGGCCUCa--- -3' miRNA: 3'- -CCGcGCGGAGGUGG---AGCCGGAGgcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 183722 | 0.67 | 0.672559 |
Target: 5'- cGGCuGCugggGCCUCUACC-CGGCCaUCCu-- -3' miRNA: 3'- -CCG-CG----CGGAGGUGGaGCCGG-AGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 24464 | 0.67 | 0.672559 |
Target: 5'- cGCGCggaccacggGCCUCaCACCcucggUGGCCaCCGAGa -3' miRNA: 3'- cCGCG---------CGGAG-GUGGa----GCCGGaGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 7405 | 0.67 | 0.672559 |
Target: 5'- aGGC-CGUCggagCCACCggGGCCaggagCCGAGa -3' miRNA: 3'- -CCGcGCGGa---GGUGGagCCGGa----GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 139061 | 0.67 | 0.663203 |
Target: 5'- cGGCGcCGCagaUCACCcUGGCCUCgGGGc -3' miRNA: 3'- -CCGC-GCGga-GGUGGaGCCGGAGgCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 56050 | 0.67 | 0.663203 |
Target: 5'- aGGCGCGCguugCC-CCagaucaCGGCCUCCGu- -3' miRNA: 3'- -CCGCGCGga--GGuGGa-----GCCGGAGGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 18094 | 0.67 | 0.657579 |
Target: 5'- cGGCGCgcgagaugagcgGCCUCaACCUggugauccgcacgccCGGCCgcaCCGAGg -3' miRNA: 3'- -CCGCG------------CGGAGgUGGA---------------GCCGGa--GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 206459 | 0.67 | 0.653826 |
Target: 5'- uGGUGCGCaacgCCcaggACCUgGGCCUCaCGGc -3' miRNA: 3'- -CCGCGCGga--GG----UGGAgCCGGAG-GCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 60559 | 0.67 | 0.653826 |
Target: 5'- uGCGCGCCuacuUCCcCCUgCGGUacaCCGAGg -3' miRNA: 3'- cCGCGCGG----AGGuGGA-GCCGga-GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 179532 | 0.67 | 0.653826 |
Target: 5'- gGGCGCGCaaagucgUCC-CgCUCGGCUUCCu-- -3' miRNA: 3'- -CCGCGCGg------AGGuG-GAGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 46399 | 0.67 | 0.653826 |
Target: 5'- uGGCGuCGCagaUgCGucCCUCGGCCUCCu-- -3' miRNA: 3'- -CCGC-GCGg--AgGU--GGAGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 117251 | 0.67 | 0.652887 |
Target: 5'- cGGCGcCGCCgccaucccgCCACCgccgucgUCGGCCguggugCCGGc -3' miRNA: 3'- -CCGC-GCGGa--------GGUGG-------AGCCGGa-----GGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 16889 | 0.67 | 0.644434 |
Target: 5'- cGGC-CGCCUCgACCcccUCGGCCgcgCCu-- -3' miRNA: 3'- -CCGcGCGGAGgUGG---AGCCGGa--GGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 123911 | 0.67 | 0.644434 |
Target: 5'- cGGCGCGCggcgcuguuCUCCACCaguugcagCGGCg-CCGAu -3' miRNA: 3'- -CCGCGCG---------GAGGUGGa-------GCCGgaGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 17250 | 0.67 | 0.644434 |
Target: 5'- aGGCGCGCCguaUUCACCUgaauaCGGauuuaUCUCCGGa -3' miRNA: 3'- -CCGCGCGG---AGGUGGA-----GCC-----GGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 104108 | 0.67 | 0.644434 |
Target: 5'- cGGCGCGCUgCCAguCCUCGGCggcgUCCu-- -3' miRNA: 3'- -CCGCGCGGaGGU--GGAGCCGg---AGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 116928 | 0.67 | 0.644434 |
Target: 5'- cGCGCGCCgacagCaCGCgaCaGCUUCCGAGg -3' miRNA: 3'- cCGCGCGGa----G-GUGgaGcCGGAGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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