Results 41 - 60 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 88003 | 0.66 | 0.700433 |
Target: 5'- gGGCGCGCgacgccgagCUguaCCACCUgcCGGUgaCCGAGg -3' miRNA: 3'- -CCGCGCG---------GA---GGUGGA--GCCGgaGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 181173 | 0.66 | 0.700433 |
Target: 5'- aGGCGCGCCagcgUCUGCCgcaccaacGCCUgCGAGc -3' miRNA: 3'- -CCGCGCGG----AGGUGGagc-----CGGAgGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 135669 | 0.66 | 0.700433 |
Target: 5'- cGGCGuCGUCaCCACCUCguccugggGGaCCUCgGGGg -3' miRNA: 3'- -CCGC-GCGGaGGUGGAG--------CC-GGAGgCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 109582 | 0.66 | 0.700433 |
Target: 5'- uGCGCGUgaagugcgCCAgCUCGGCCagCGAGc -3' miRNA: 3'- cCGCGCGga------GGUgGAGCCGGagGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 127306 | 0.66 | 0.700433 |
Target: 5'- uGGCGCGCCUCgAUgUUGGCgUUgGu- -3' miRNA: 3'- -CCGCGCGGAGgUGgAGCCGgAGgCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 153712 | 0.66 | 0.700433 |
Target: 5'- gGGaCGCGCgUCCACCagCGGCa--CGAu -3' miRNA: 3'- -CC-GCGCGgAGGUGGa-GCCGgagGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 145387 | 0.66 | 0.700433 |
Target: 5'- cGGUGCGCgaCgGCCUgGGCCUgcucaUCGAc -3' miRNA: 3'- -CCGCGCGgaGgUGGAgCCGGA-----GGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 132604 | 0.66 | 0.700433 |
Target: 5'- cGGCGUcgGCgUCCGCaaCGGCUUCCa-- -3' miRNA: 3'- -CCGCG--CGgAGGUGgaGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 86696 | 0.66 | 0.691181 |
Target: 5'- uGGCGCuGCCgCCcuuGCC-CGGCCg-CGAGa -3' miRNA: 3'- -CCGCG-CGGaGG---UGGaGCCGGagGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 153921 | 0.66 | 0.691181 |
Target: 5'- cGUGCaGCUUCCAcuCCUCGGCCacccgCCGc- -3' miRNA: 3'- cCGCG-CGGAGGU--GGAGCCGGa----GGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 178601 | 0.66 | 0.691181 |
Target: 5'- gGGCGC-CCUCCugCagcaCGGCgUCCa-- -3' miRNA: 3'- -CCGCGcGGAGGugGa---GCCGgAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 142335 | 0.66 | 0.691181 |
Target: 5'- gGGUGCGCgaggCCGCCgccaCGGCCgCCGcGg -3' miRNA: 3'- -CCGCGCGga--GGUGGa---GCCGGaGGCuC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 157179 | 0.66 | 0.691181 |
Target: 5'- aGCGCGCCUaUCugCagaaGGUCUCgGAGg -3' miRNA: 3'- cCGCGCGGA-GGugGag--CCGGAGgCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 28325 | 0.66 | 0.691181 |
Target: 5'- cGGCGCgGCCUgcggaCCGCCggUGGCCgauagCGAGu -3' miRNA: 3'- -CCGCG-CGGA-----GGUGGa-GCCGGag---GCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 181863 | 0.67 | 0.681887 |
Target: 5'- cGGCGCGCUUCUucgcGCCagagGGCCUgguggaguUCGAGg -3' miRNA: 3'- -CCGCGCGGAGG----UGGag--CCGGA--------GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 72144 | 0.67 | 0.681887 |
Target: 5'- aGGaCG-GCCUgCCACCagGGaCCUCCGGc -3' miRNA: 3'- -CC-GCgCGGA-GGUGGagCC-GGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 120274 | 0.67 | 0.681887 |
Target: 5'- gGGCGCuCCcCCgggACCgcCGGCCgCCGAGg -3' miRNA: 3'- -CCGCGcGGaGG---UGGa-GCCGGaGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 145986 | 0.67 | 0.681887 |
Target: 5'- uGGCGCGCUUcCCGCUgcCGGCUUuuGu- -3' miRNA: 3'- -CCGCGCGGA-GGUGGa-GCCGGAggCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 144026 | 0.67 | 0.681887 |
Target: 5'- cGCGCGCUUCC-CCgucucCGGUCUgCGGc -3' miRNA: 3'- cCGCGCGGAGGuGGa----GCCGGAgGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 105053 | 0.67 | 0.681887 |
Target: 5'- aGCGCcacuGCCgccaCCGCCuUCGGUC-CCGGGa -3' miRNA: 3'- cCGCG----CGGa---GGUGG-AGCCGGaGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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