miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 119535 0.66 0.736886
Target:  5'- gGGuUGUGCCgcagcaCCACCUCGGCg-CCGuGc -3'
miRNA:   3'- -CC-GCGCGGa-----GGUGGAGCCGgaGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 58935 0.66 0.736886
Target:  5'- gGGCuGCGCCucgaacUCCACCa-GGCCcUCUGGc -3'
miRNA:   3'- -CCG-CGCGG------AGGUGGagCCGG-AGGCUc -5'
14620 5' -63.3 NC_003521.1 + 125051 0.66 0.734189
Target:  5'- cGUGCGCCgUCACaC-CGGCCUucugaucuccuuccCCGAGg -3'
miRNA:   3'- cCGCGCGGaGGUG-GaGCCGGA--------------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 31739 0.66 0.72787
Target:  5'- cGGCcacCGCCUCCGCCgccucgacCGGCacaUCgGGGu -3'
miRNA:   3'- -CCGc--GCGGAGGUGGa-------GCCGg--AGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 145298 0.66 0.72787
Target:  5'- cGGCGUcucGCCgggcaUCCAgUUCGGCCUgaagcaCGAGg -3'
miRNA:   3'- -CCGCG---CGG-----AGGUgGAGCCGGAg-----GCUC- -5'
14620 5' -63.3 NC_003521.1 + 210367 0.66 0.72787
Target:  5'- aGGUGCGCgUCaucggcacCCUCGGCCgCCuGGa -3'
miRNA:   3'- -CCGCGCGgAGgu------GGAGCCGGaGGcUC- -5'
14620 5' -63.3 NC_003521.1 + 112466 0.66 0.72787
Target:  5'- gGGCGCGCCcggcggggCCACCuacuUCGGCaUCaCGcAGa -3'
miRNA:   3'- -CCGCGCGGa-------GGUGG----AGCCGgAG-GC-UC- -5'
14620 5' -63.3 NC_003521.1 + 188467 0.66 0.726965
Target:  5'- -aCGCGCCUCCgagcuacgagcagGCCgUgGGCCUggguccgccgCCGAGa -3'
miRNA:   3'- ccGCGCGGAGG-------------UGG-AgCCGGA----------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 75996 0.66 0.726965
Target:  5'- cGGC-CGCCgguUCCuCCUCccccgcgGGCgCUCCGGGa -3'
miRNA:   3'- -CCGcGCGG---AGGuGGAG-------CCG-GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 57574 0.66 0.718785
Target:  5'- cGCGCGCCUUCgagggcGCCggCGGCgaaccCCGAGu -3'
miRNA:   3'- cCGCGCGGAGG------UGGa-GCCGga---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 19751 0.66 0.718785
Target:  5'- cGGCGUcggGCUUCCACUUCaGCCaCCGc- -3'
miRNA:   3'- -CCGCG---CGGAGGUGGAGcCGGaGGCuc -5'
14620 5' -63.3 NC_003521.1 + 62857 0.66 0.718785
Target:  5'- aGGUGUGCC-CCGCCUCaGCauccCUCCcGGu -3'
miRNA:   3'- -CCGCGCGGaGGUGGAGcCG----GAGGcUC- -5'
14620 5' -63.3 NC_003521.1 + 109439 0.66 0.718785
Target:  5'- aGGCuGaCGCCcgUCACCUCGGCgaaCUCCa-- -3'
miRNA:   3'- -CCG-C-GCGGa-GGUGGAGCCG---GAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 17723 0.66 0.709636
Target:  5'- cGGC-CGCCaUCCcgcagAUCUacgcacguucgcUGGCCUCCGAGu -3'
miRNA:   3'- -CCGcGCGG-AGG-----UGGA------------GCCGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 195497 0.66 0.709636
Target:  5'- cGGCGaagaggucguaGCCgucggCCAgCUCGGgCUCCGGc -3'
miRNA:   3'- -CCGCg----------CGGa----GGUgGAGCCgGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 146528 0.66 0.709636
Target:  5'- --gGCGgCUCCACC-CGGgucCCUCCGGc -3'
miRNA:   3'- ccgCGCgGAGGUGGaGCC---GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 75572 0.66 0.709636
Target:  5'- aGCGC-CCUCCuguCCUCGuCCUCCu-- -3'
miRNA:   3'- cCGCGcGGAGGu--GGAGCcGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 191238 0.66 0.709636
Target:  5'- cGGUGaCGCCUU--CCUCGGCaCUCguCGGGg -3'
miRNA:   3'- -CCGC-GCGGAGguGGAGCCG-GAG--GCUC- -5'
14620 5' -63.3 NC_003521.1 + 137995 0.66 0.709636
Target:  5'- cGCGCGCaggUCgAUCUCGGCg-UCGAGg -3'
miRNA:   3'- cCGCGCGg--AGgUGGAGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 88003 0.66 0.700433
Target:  5'- gGGCGCGCgacgccgagCUguaCCACCUgcCGGUgaCCGAGg -3'
miRNA:   3'- -CCGCGCG---------GA---GGUGGA--GCCGgaGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.