miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 131460 0.73 0.344736
Target:  5'- aGGcCGCGCuCUCgGCCucgUCGGCCUCCu-- -3'
miRNA:   3'- -CC-GCGCG-GAGgUGG---AGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 128620 0.73 0.351868
Target:  5'- aGCaGCGCCUCCGCUUCGGacacgcgccCCUCCa-- -3'
miRNA:   3'- cCG-CGCGGAGGUGGAGCC---------GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 219809 0.72 0.359103
Target:  5'- uGGCGUuaC-CCGCCUCcaGGcCCUCCGAGa -3'
miRNA:   3'- -CCGCGcgGaGGUGGAG--CC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 236374 0.72 0.381426
Target:  5'- aGGCgGUGCCUucagaUCGCCUCGGgcguUCUCCGGGa -3'
miRNA:   3'- -CCG-CGCGGA-----GGUGGAGCC----GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 123344 0.72 0.389071
Target:  5'- cGGCcccaGCGCCgCgGCCgUGGCCUCCGAc -3'
miRNA:   3'- -CCG----CGCGGaGgUGGaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 153177 0.72 0.389071
Target:  5'- gGGCuGCGCCUCCAgCCUgugcgaGGCCUgCGGc -3'
miRNA:   3'- -CCG-CGCGGAGGU-GGAg-----CCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 209020 0.72 0.396815
Target:  5'- cGGCGCucaaacGCCUCUA-CUCGGCCUUcugCGAGu -3'
miRNA:   3'- -CCGCG------CGGAGGUgGAGCCGGAG---GCUC- -5'
14620 5' -63.3 NC_003521.1 + 154616 0.72 0.403868
Target:  5'- cGGCGUgccgccgcccuucGCCUCCACCgUGGCC-CgCGAGu -3'
miRNA:   3'- -CCGCG-------------CGGAGGUGGaGCCGGaG-GCUC- -5'
14620 5' -63.3 NC_003521.1 + 176954 0.71 0.412596
Target:  5'- cGGCGCGCCgccucgUCCACCUgugucagGGCCUUgGAc -3'
miRNA:   3'- -CCGCGCGG------AGGUGGAg------CCGGAGgCUc -5'
14620 5' -63.3 NC_003521.1 + 88434 0.71 0.415799
Target:  5'- uGCGCGUCUCCagggagacgucguccGCCUCGGCgUCgGGc -3'
miRNA:   3'- cCGCGCGGAGG---------------UGGAGCCGgAGgCUc -5'
14620 5' -63.3 NC_003521.1 + 136368 0.71 0.418211
Target:  5'- aGGaUGCGCugcgacuuccuacaCUCCACCUCGGCCg-CGGGc -3'
miRNA:   3'- -CC-GCGCG--------------GAGGUGGAGCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 223666 0.71 0.420632
Target:  5'- cGCuGCGCCUCgGCCUCGcGCCgcugCUGGa -3'
miRNA:   3'- cCG-CGCGGAGgUGGAGC-CGGa---GGCUc -5'
14620 5' -63.3 NC_003521.1 + 226071 0.71 0.420632
Target:  5'- aGGCGCGCCcCgGCCgCGGCCggcCCGu- -3'
miRNA:   3'- -CCGCGCGGaGgUGGaGCCGGa--GGCuc -5'
14620 5' -63.3 NC_003521.1 + 56917 0.71 0.42876
Target:  5'- aGCGCcgcagcaccGCCUCCagcACCUCGGCCUCg--- -3'
miRNA:   3'- cCGCG---------CGGAGG---UGGAGCCGGAGgcuc -5'
14620 5' -63.3 NC_003521.1 + 13802 0.71 0.436981
Target:  5'- aGGCGCGUUUCCACgUCaGCgUCgGGGu -3'
miRNA:   3'- -CCGCGCGGAGGUGgAGcCGgAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 63250 0.71 0.45369
Target:  5'- cGGCGcCGCCaccuuugacgagUCCuuCCUCGGCgaCCGGGu -3'
miRNA:   3'- -CCGC-GCGG------------AGGu-GGAGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 145261 0.7 0.462173
Target:  5'- aGgGCGCCUCCucgGCCUCGGCggCCa-- -3'
miRNA:   3'- cCgCGCGGAGG---UGGAGCCGgaGGcuc -5'
14620 5' -63.3 NC_003521.1 + 88460 0.7 0.47074
Target:  5'- gGGCGCGCCgCC-CCggcCGGCC-CCaGAGc -3'
miRNA:   3'- -CCGCGCGGaGGuGGa--GCCGGaGG-CUC- -5'
14620 5' -63.3 NC_003521.1 + 113773 0.7 0.47074
Target:  5'- cGGCaccGCGUCUCCAuCCUCGGuuCCUCCc-- -3'
miRNA:   3'- -CCG---CGCGGAGGU-GGAGCC--GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 205004 0.7 0.478518
Target:  5'- cGGCGCGCaccgccagguucuCgcccacgCCGCCguagUCGGCCUUCGGGu -3'
miRNA:   3'- -CCGCGCG-------------Ga------GGUGG----AGCCGGAGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.