Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 223588 | 1.1 | 0.001015 |
Target: 5'- cGGCGCGCCUCCACCUCGGCCUCCGAGa -3' miRNA: 3'- -CCGCGCGGAGGUGGAGCCGGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 45412 | 0.83 | 0.081013 |
Target: 5'- cGGcCGUgGCCUCCACCuccUCGGCCUCCGAu -3' miRNA: 3'- -CC-GCG-CGGAGGUGG---AGCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 153438 | 0.8 | 0.120561 |
Target: 5'- cGGCGUcaccuccgccgccucGuCCUCCACCUCGGCCUCCu-- -3' miRNA: 3'- -CCGCG---------------C-GGAGGUGGAGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 91930 | 0.78 | 0.178286 |
Target: 5'- cGGCGCuCCUCgGCgUCGGCCacggCCGAGg -3' miRNA: 3'- -CCGCGcGGAGgUGgAGCCGGa---GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 204525 | 0.76 | 0.213605 |
Target: 5'- gGGUGCGCC-CCACC-CGGCCUCguuuuucugcuuaCGGGg -3' miRNA: 3'- -CCGCGCGGaGGUGGaGCCGGAG-------------GCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 128373 | 0.76 | 0.214088 |
Target: 5'- gGGCGCGCCcaccagggCCGCCUgGGCCgcCUGAGc -3' miRNA: 3'- -CCGCGCGGa-------GGUGGAgCCGGa-GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 73151 | 0.76 | 0.214088 |
Target: 5'- cGGCgGCGgCgCCGCCUCGGCCUgCGAc -3' miRNA: 3'- -CCG-CGCgGaGGUGGAGCCGGAgGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 115397 | 0.75 | 0.273211 |
Target: 5'- gGGCGCggGCggCCGCCaCGGCCUCCGGa -3' miRNA: 3'- -CCGCG--CGgaGGUGGaGCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 169168 | 0.74 | 0.279191 |
Target: 5'- uGGUGCGCCgcUCCAaCUCGGCCUCgGu- -3' miRNA: 3'- -CCGCGCGG--AGGUgGAGCCGGAGgCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 148522 | 0.74 | 0.285274 |
Target: 5'- cGGCuGCGCCUCCuCC-CGcGCCUuccCCGAGg -3' miRNA: 3'- -CCG-CGCGGAGGuGGaGC-CGGA---GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 146841 | 0.74 | 0.285274 |
Target: 5'- gGGgGCGCCUCguCCUCG-CCUCCGc- -3' miRNA: 3'- -CCgCGCGGAGguGGAGCcGGAGGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 152774 | 0.74 | 0.287736 |
Target: 5'- cGGCGuCGCCUCCugcgccuugcgcaccGCCUCGGUCaCCGGc -3' miRNA: 3'- -CCGC-GCGGAGG---------------UGGAGCCGGaGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 174504 | 0.74 | 0.304149 |
Target: 5'- aGGCG-GCCUCCACggCUUGGaucaCCUCCGGGu -3' miRNA: 3'- -CCGCgCGGAGGUG--GAGCC----GGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 73623 | 0.73 | 0.317258 |
Target: 5'- cGGCGCGCCUgCCAgCCcaagcagaaGGCCUCCGc- -3' miRNA: 3'- -CCGCGCGGA-GGU-GGag-------CCGGAGGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 179094 | 0.73 | 0.317258 |
Target: 5'- uGCGCGCCUCCuguACCagucccgCGGCUUCCGu- -3' miRNA: 3'- cCGCGCGGAGG---UGGa------GCCGGAGGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 240038 | 0.73 | 0.323294 |
Target: 5'- gGGCGCcgggcgguccuccGCCgauggcgCCugCUUGGCCUCCGGc -3' miRNA: 3'- -CCGCG-------------CGGa------GGugGAGCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 39811 | 0.73 | 0.323294 |
Target: 5'- gGGCGCcgggcgguccuccGCCgauggcgCCugCUUGGCCUCCGGc -3' miRNA: 3'- -CCGCG-------------CGGa------GGugGAGCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 2355 | 0.73 | 0.323969 |
Target: 5'- gGGcCGCGUCUCCGCC-CcGCCcgCCGAGg -3' miRNA: 3'- -CC-GCGCGGAGGUGGaGcCGGa-GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 3652 | 0.73 | 0.330787 |
Target: 5'- cGGcCGcCGCCgUCUGCCUCGGCggCCGGGa -3' miRNA: 3'- -CC-GC-GCGG-AGGUGGAGCCGgaGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 149181 | 0.73 | 0.330787 |
Target: 5'- cGGCGCGCgucgCCACCggCGGCCa-CGAGg -3' miRNA: 3'- -CCGCGCGga--GGUGGa-GCCGGagGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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