miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 191238 0.66 0.709636
Target:  5'- cGGUGaCGCCUU--CCUCGGCaCUCguCGGGg -3'
miRNA:   3'- -CCGC-GCGGAGguGGAGCCG-GAG--GCUC- -5'
14620 5' -63.3 NC_003521.1 + 112466 0.66 0.72787
Target:  5'- gGGCGCGCCcggcggggCCACCuacuUCGGCaUCaCGcAGa -3'
miRNA:   3'- -CCGCGCGGa-------GGUGG----AGCCGgAG-GC-UC- -5'
14620 5' -63.3 NC_003521.1 + 145298 0.66 0.72787
Target:  5'- cGGCGUcucGCCgggcaUCCAgUUCGGCCUgaagcaCGAGg -3'
miRNA:   3'- -CCGCG---CGG-----AGGUgGAGCCGGAg-----GCUC- -5'
14620 5' -63.3 NC_003521.1 + 28325 0.66 0.691181
Target:  5'- cGGCGCgGCCUgcggaCCGCCggUGGCCgauagCGAGu -3'
miRNA:   3'- -CCGCG-CGGA-----GGUGGa-GCCGGag---GCUC- -5'
14620 5' -63.3 NC_003521.1 + 153921 0.66 0.691181
Target:  5'- cGUGCaGCUUCCAcuCCUCGGCCacccgCCGc- -3'
miRNA:   3'- cCGCG-CGGAGGU--GGAGCCGGa----GGCuc -5'
14620 5' -63.3 NC_003521.1 + 75572 0.66 0.709636
Target:  5'- aGCGC-CCUCCuguCCUCGuCCUCCu-- -3'
miRNA:   3'- cCGCGcGGAGGu--GGAGCcGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 142335 0.66 0.691181
Target:  5'- gGGUGCGCgaggCCGCCgccaCGGCCgCCGcGg -3'
miRNA:   3'- -CCGCGCGga--GGUGGa---GCCGGaGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 146528 0.66 0.709636
Target:  5'- --gGCGgCUCCACC-CGGgucCCUCCGGc -3'
miRNA:   3'- ccgCGCgGAGGUGGaGCC---GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 132604 0.66 0.700433
Target:  5'- cGGCGUcgGCgUCCGCaaCGGCUUCCa-- -3'
miRNA:   3'- -CCGCG--CGgAGGUGgaGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 163789 0.66 0.700433
Target:  5'- aGCgGCGCCaCCACCgcCGGCCUCa--- -3'
miRNA:   3'- cCG-CGCGGaGGUGGa-GCCGGAGgcuc -5'
14620 5' -63.3 NC_003521.1 + 127306 0.66 0.700433
Target:  5'- uGGCGCGCCUCgAUgUUGGCgUUgGu- -3'
miRNA:   3'- -CCGCGCGGAGgUGgAGCCGgAGgCuc -5'
14620 5' -63.3 NC_003521.1 + 62857 0.66 0.718785
Target:  5'- aGGUGUGCC-CCGCCUCaGCauccCUCCcGGu -3'
miRNA:   3'- -CCGCGCGGaGGUGGAGcCG----GAGGcUC- -5'
14620 5' -63.3 NC_003521.1 + 145387 0.66 0.700433
Target:  5'- cGGUGCGCgaCgGCCUgGGCCUgcucaUCGAc -3'
miRNA:   3'- -CCGCGCGgaGgUGGAgCCGGA-----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 86696 0.66 0.691181
Target:  5'- uGGCGCuGCCgCCcuuGCC-CGGCCg-CGAGa -3'
miRNA:   3'- -CCGCG-CGGaGG---UGGaGCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 31739 0.66 0.72787
Target:  5'- cGGCcacCGCCUCCGCCgccucgacCGGCacaUCgGGGu -3'
miRNA:   3'- -CCGc--GCGGAGGUGGa-------GCCGg--AGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 57574 0.66 0.718785
Target:  5'- cGCGCGCCUUCgagggcGCCggCGGCgaaccCCGAGu -3'
miRNA:   3'- cCGCGCGGAGG------UGGa-GCCGga---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 184195 0.66 0.745825
Target:  5'- uGGUGCGCUUCUucg-UGGaCCUCUGGGa -3'
miRNA:   3'- -CCGCGCGGAGGuggaGCC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 153712 0.66 0.700433
Target:  5'- gGGaCGCGCgUCCACCagCGGCa--CGAu -3'
miRNA:   3'- -CC-GCGCGgAGGUGGa-GCCGgagGCUc -5'
14620 5' -63.3 NC_003521.1 + 58935 0.66 0.736886
Target:  5'- gGGCuGCGCCucgaacUCCACCa-GGCCcUCUGGc -3'
miRNA:   3'- -CCG-CGCGG------AGGUGGagCCGG-AGGCUc -5'
14620 5' -63.3 NC_003521.1 + 137995 0.66 0.709636
Target:  5'- cGCGCGCaggUCgAUCUCGGCg-UCGAGg -3'
miRNA:   3'- cCGCGCGg--AGgUGGAGCCGgaGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.