miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 135669 0.66 0.700433
Target:  5'- cGGCGuCGUCaCCACCUCguccugggGGaCCUCgGGGg -3'
miRNA:   3'- -CCGC-GCGGaGGUGGAG--------CC-GGAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 181173 0.66 0.700433
Target:  5'- aGGCGCGCCagcgUCUGCCgcaccaacGCCUgCGAGc -3'
miRNA:   3'- -CCGCGCGG----AGGUGGagc-----CGGAgGCUC- -5'
14620 5' -63.3 NC_003521.1 + 58935 0.66 0.736886
Target:  5'- gGGCuGCGCCucgaacUCCACCa-GGCCcUCUGGc -3'
miRNA:   3'- -CCG-CGCGG------AGGUGGagCCGG-AGGCUc -5'
14620 5' -63.3 NC_003521.1 + 112648 0.66 0.745825
Target:  5'- aGCGCGUCUaCCACCU-GGCCcagaUgGAGa -3'
miRNA:   3'- cCGCGCGGA-GGUGGAgCCGGa---GgCUC- -5'
14620 5' -63.3 NC_003521.1 + 119535 0.66 0.736886
Target:  5'- gGGuUGUGCCgcagcaCCACCUCGGCg-CCGuGc -3'
miRNA:   3'- -CC-GCGCGGa-----GGUGGAGCCGgaGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 55658 0.66 0.745825
Target:  5'- aGGUGCGCCaCCucguCgUCGGgCCccaCCGAGa -3'
miRNA:   3'- -CCGCGCGGaGGu---GgAGCC-GGa--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 137995 0.66 0.709636
Target:  5'- cGCGCGCaggUCgAUCUCGGCg-UCGAGg -3'
miRNA:   3'- cCGCGCGg--AGgUGGAGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 76393 0.66 0.736886
Target:  5'- cGGCGC-CCUCCACCUUGccgauguagcGCUUCUu-- -3'
miRNA:   3'- -CCGCGcGGAGGUGGAGC----------CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 62857 0.66 0.718785
Target:  5'- aGGUGUGCC-CCGCCUCaGCauccCUCCcGGu -3'
miRNA:   3'- -CCGCGCGGaGGUGGAGcCG----GAGGcUC- -5'
14620 5' -63.3 NC_003521.1 + 112466 0.66 0.72787
Target:  5'- gGGCGCGCCcggcggggCCACCuacuUCGGCaUCaCGcAGa -3'
miRNA:   3'- -CCGCGCGGa-------GGUGG----AGCCGgAG-GC-UC- -5'
14620 5' -63.3 NC_003521.1 + 191238 0.66 0.709636
Target:  5'- cGGUGaCGCCUU--CCUCGGCaCUCguCGGGg -3'
miRNA:   3'- -CCGC-GCGGAGguGGAGCCG-GAG--GCUC- -5'
14620 5' -63.3 NC_003521.1 + 37129 0.66 0.736886
Target:  5'- cGGCGCGCaacaugCCGCg-CGGCUUCUGc- -3'
miRNA:   3'- -CCGCGCGga----GGUGgaGCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 17723 0.66 0.709636
Target:  5'- cGGC-CGCCaUCCcgcagAUCUacgcacguucgcUGGCCUCCGAGu -3'
miRNA:   3'- -CCGcGCGG-AGG-----UGGA------------GCCGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 88003 0.66 0.700433
Target:  5'- gGGCGCGCgacgccgagCUguaCCACCUgcCGGUgaCCGAGg -3'
miRNA:   3'- -CCGCGCG---------GA---GGUGGA--GCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 54712 0.66 0.745825
Target:  5'- gGGCGCGCacauggagAUCUUGGCCgagaggUCCGAGa -3'
miRNA:   3'- -CCGCGCGgagg----UGGAGCCGG------AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 157179 0.66 0.691181
Target:  5'- aGCGCGCCUaUCugCagaaGGUCUCgGAGg -3'
miRNA:   3'- cCGCGCGGA-GGugGag--CCGGAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 178601 0.66 0.691181
Target:  5'- gGGCGC-CCUCCugCagcaCGGCgUCCa-- -3'
miRNA:   3'- -CCGCGcGGAGGugGa---GCCGgAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 195497 0.66 0.709636
Target:  5'- cGGCGaagaggucguaGCCgucggCCAgCUCGGgCUCCGGc -3'
miRNA:   3'- -CCGCg----------CGGa----GGUgGAGCCgGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 195001 0.66 0.745825
Target:  5'- -aCGCGCUUUCGCCgugccagUGGCCUUCGc- -3'
miRNA:   3'- ccGCGCGGAGGUGGa------GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 196744 0.66 0.745825
Target:  5'- cGGCgGCGCCUgCACCgucugCuGCC-CCGGc -3'
miRNA:   3'- -CCG-CGCGGAgGUGGa----GcCGGaGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.